Hb_047923_020

Information

Type -
Description -
Location Contig47923: 8537-11379
Sequence    

Annotation

kegg
ID cam:101500443
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID -
description -
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description movement protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047923_020 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_004604_020 0.0993220534 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
3 Hb_003793_020 0.1415675511 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004044_060 0.1803762237 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000438_040 0.2316903142 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_004041_070 0.2362352618 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000009_260 0.2378498584 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
8 Hb_001545_220 0.2930946412 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
9 Hb_000740_030 0.2960659323 - - hypothetical protein VITISV_038271 [Vitis vinifera]
10 Hb_128912_010 0.2975404544 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
11 Hb_004324_410 0.3065225752 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
12 Hb_007481_020 0.3093169203 - - -
13 Hb_017987_080 0.3098043807 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
14 Hb_000046_230 0.3130838314 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
15 Hb_102408_010 0.3149091141 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
16 Hb_000184_080 0.3166969026 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
17 Hb_089920_010 0.3188147696 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_001903_020 0.3229247869 - - -
19 Hb_002019_030 0.3231231739 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_006418_010 0.325457135 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_047923_020 Hb_047923_020 Hb_004604_020 Hb_004604_020 Hb_047923_020--Hb_004604_020 Hb_003793_020 Hb_003793_020 Hb_047923_020--Hb_003793_020 Hb_004044_060 Hb_004044_060 Hb_047923_020--Hb_004044_060 Hb_000438_040 Hb_000438_040 Hb_047923_020--Hb_000438_040 Hb_004041_070 Hb_004041_070 Hb_047923_020--Hb_004041_070 Hb_000009_260 Hb_000009_260 Hb_047923_020--Hb_000009_260 Hb_004604_020--Hb_003793_020 Hb_004604_020--Hb_004041_070 Hb_004604_020--Hb_004044_060 Hb_004604_020--Hb_000009_260 Hb_000046_230 Hb_000046_230 Hb_004604_020--Hb_000046_230 Hb_003793_020--Hb_004041_070 Hb_003793_020--Hb_000009_260 Hb_003793_020--Hb_004044_060 Hb_102408_010 Hb_102408_010 Hb_003793_020--Hb_102408_010 Hb_004044_060--Hb_000009_260 Hb_128912_010 Hb_128912_010 Hb_004044_060--Hb_128912_010 Hb_001545_220 Hb_001545_220 Hb_004044_060--Hb_001545_220 Hb_004324_410 Hb_004324_410 Hb_004044_060--Hb_004324_410 Hb_000184_080 Hb_000184_080 Hb_000438_040--Hb_000184_080 Hb_000021_120 Hb_000021_120 Hb_000438_040--Hb_000021_120 Hb_007481_020 Hb_007481_020 Hb_000438_040--Hb_007481_020 Hb_000111_220 Hb_000111_220 Hb_000438_040--Hb_000111_220 Hb_000438_040--Hb_004044_060 Hb_004041_070--Hb_102408_010 Hb_004041_070--Hb_000009_260 Hb_012278_010 Hb_012278_010 Hb_004041_070--Hb_012278_010 Hb_004041_070--Hb_004044_060 Hb_000009_260--Hb_102408_010 Hb_000009_260--Hb_012278_010 Hb_000009_260--Hb_004324_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0231121 0 0 0.00935064 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0132756 0

CAGE analysis