Hb_000021_120

Information

Type -
Description -
Location Contig21: 308615-311871
Sequence    

Annotation

kegg
ID sot:102597679
description uncharacterized LOC102597679
nr
ID XP_009625043.1
description PREDICTED: uncharacterized protein LOC104115996 isoform X1 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000021_120 0.0 - - PREDICTED: uncharacterized protein LOC104115996 isoform X1 [Nicotiana tomentosiformis]
2 Hb_007481_020 0.1862777516 - - -
3 Hb_012702_020 0.1935821263 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
4 Hb_003752_130 0.1969713657 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
5 Hb_015912_010 0.2021472195 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000101_060 0.2038073659 - - -
7 Hb_000438_040 0.2096448456 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
8 Hb_008111_020 0.2167215607 - - Receptor like protein 6, putative [Theobroma cacao]
9 Hb_000035_300 0.2177177854 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002157_180 0.2231605721 - - separase, putative [Ricinus communis]
11 Hb_166257_010 0.2294233431 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
12 Hb_000291_020 0.2324377823 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
13 Hb_004041_090 0.2348806714 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007773_030 0.237870446 - - -
15 Hb_002400_250 0.2399231487 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_002787_100 0.241088774 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
17 Hb_157122_010 0.2419663119 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
18 Hb_003085_050 0.2450506469 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
19 Hb_008225_100 0.2455093124 - - -
20 Hb_002553_160 0.2456674302 - - PREDICTED: uncharacterized protein LOC104590935 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000021_120 Hb_000021_120 Hb_007481_020 Hb_007481_020 Hb_000021_120--Hb_007481_020 Hb_012702_020 Hb_012702_020 Hb_000021_120--Hb_012702_020 Hb_003752_130 Hb_003752_130 Hb_000021_120--Hb_003752_130 Hb_015912_010 Hb_015912_010 Hb_000021_120--Hb_015912_010 Hb_000101_060 Hb_000101_060 Hb_000021_120--Hb_000101_060 Hb_000438_040 Hb_000438_040 Hb_000021_120--Hb_000438_040 Hb_001951_030 Hb_001951_030 Hb_007481_020--Hb_001951_030 Hb_000097_040 Hb_000097_040 Hb_007481_020--Hb_000097_040 Hb_007144_010 Hb_007144_010 Hb_007481_020--Hb_007144_010 Hb_007481_020--Hb_000438_040 Hb_005157_010 Hb_005157_010 Hb_007481_020--Hb_005157_010 Hb_012702_020--Hb_000101_060 Hb_012702_020--Hb_015912_010 Hb_012702_020--Hb_003752_130 Hb_008111_020 Hb_008111_020 Hb_012702_020--Hb_008111_020 Hb_002157_180 Hb_002157_180 Hb_012702_020--Hb_002157_180 Hb_166257_010 Hb_166257_010 Hb_012702_020--Hb_166257_010 Hb_003752_130--Hb_008111_020 Hb_003752_130--Hb_015912_010 Hb_003752_130--Hb_002157_180 Hb_003752_130--Hb_000101_060 Hb_000291_020 Hb_000291_020 Hb_003752_130--Hb_000291_020 Hb_015912_010--Hb_000101_060 Hb_002400_250 Hb_002400_250 Hb_015912_010--Hb_002400_250 Hb_015912_010--Hb_166257_010 Hb_000035_300 Hb_000035_300 Hb_015912_010--Hb_000035_300 Hb_000101_060--Hb_166257_010 Hb_009297_010 Hb_009297_010 Hb_000101_060--Hb_009297_010 Hb_002553_080 Hb_002553_080 Hb_000101_060--Hb_002553_080 Hb_000184_080 Hb_000184_080 Hb_000438_040--Hb_000184_080 Hb_047923_020 Hb_047923_020 Hb_000438_040--Hb_047923_020 Hb_000111_220 Hb_000111_220 Hb_000438_040--Hb_000111_220 Hb_004044_060 Hb_004044_060 Hb_000438_040--Hb_004044_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.160776 0.0390409 0 0.0127983 0.0126694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.127774 0

CAGE analysis