Hb_000184_080

Information

Type -
Description -
Location Contig184: 84315-90159
Sequence    

Annotation

kegg
ID csv:101213227
description uncharacterized LOC101213227
nr
ID AAC26250.1
description contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O81506
description Putative retrotransposon protein OS=Arabidopsis thaliana GN=T7M24.7 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_080 0.0 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
2 Hb_000438_040 0.1931114001 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_004041_070 0.2283551844 - - conserved hypothetical protein [Ricinus communis]
4 Hb_136850_040 0.2361091141 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000389_250 0.2366076394 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21556 [Jatropha curcas]
6 Hb_000111_220 0.2423912492 - - unnamed protein product [Vitis vinifera]
7 Hb_003793_020 0.2435023251 - - conserved hypothetical protein [Ricinus communis]
8 Hb_102408_010 0.2486640809 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
9 Hb_000009_260 0.2536844165 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
10 Hb_000359_110 0.2640508257 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]
11 Hb_000173_200 0.2666212526 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000510_350 0.2666672892 - - Putative polyprotein [Oryza sativa Japonica Group]
13 Hb_004324_410 0.2681491429 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
14 Hb_000890_190 0.2733441504 - - glutaredoxin, grx, putative [Ricinus communis]
15 Hb_000836_590 0.2741827191 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
16 Hb_012278_010 0.2745200491 - - -
17 Hb_168039_020 0.2756699627 - - -
18 Hb_051450_010 0.2812119386 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003683_090 0.2843683756 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_000165_220 0.2851482378 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_000184_080 Hb_000184_080 Hb_000438_040 Hb_000438_040 Hb_000184_080--Hb_000438_040 Hb_004041_070 Hb_004041_070 Hb_000184_080--Hb_004041_070 Hb_136850_040 Hb_136850_040 Hb_000184_080--Hb_136850_040 Hb_000389_250 Hb_000389_250 Hb_000184_080--Hb_000389_250 Hb_000111_220 Hb_000111_220 Hb_000184_080--Hb_000111_220 Hb_003793_020 Hb_003793_020 Hb_000184_080--Hb_003793_020 Hb_000021_120 Hb_000021_120 Hb_000438_040--Hb_000021_120 Hb_007481_020 Hb_007481_020 Hb_000438_040--Hb_007481_020 Hb_047923_020 Hb_047923_020 Hb_000438_040--Hb_047923_020 Hb_000438_040--Hb_000111_220 Hb_004044_060 Hb_004044_060 Hb_000438_040--Hb_004044_060 Hb_102408_010 Hb_102408_010 Hb_004041_070--Hb_102408_010 Hb_004041_070--Hb_003793_020 Hb_000009_260 Hb_000009_260 Hb_004041_070--Hb_000009_260 Hb_012278_010 Hb_012278_010 Hb_004041_070--Hb_012278_010 Hb_004604_020 Hb_004604_020 Hb_004041_070--Hb_004604_020 Hb_004041_070--Hb_004044_060 Hb_003228_070 Hb_003228_070 Hb_136850_040--Hb_003228_070 Hb_000173_200 Hb_000173_200 Hb_136850_040--Hb_000173_200 Hb_003939_020 Hb_003939_020 Hb_136850_040--Hb_003939_020 Hb_009773_040 Hb_009773_040 Hb_136850_040--Hb_009773_040 Hb_000336_300 Hb_000336_300 Hb_136850_040--Hb_000336_300 Hb_051450_010 Hb_051450_010 Hb_000389_250--Hb_051450_010 Hb_000836_590 Hb_000836_590 Hb_000389_250--Hb_000836_590 Hb_002205_260 Hb_002205_260 Hb_000389_250--Hb_002205_260 Hb_055706_010 Hb_055706_010 Hb_000389_250--Hb_055706_010 Hb_089140_020 Hb_089140_020 Hb_000389_250--Hb_089140_020 Hb_025030_010 Hb_025030_010 Hb_000389_250--Hb_025030_010 Hb_000111_220--Hb_000836_590 Hb_000893_050 Hb_000893_050 Hb_000111_220--Hb_000893_050 Hb_004785_120 Hb_004785_120 Hb_000111_220--Hb_004785_120 Hb_001021_110 Hb_001021_110 Hb_000111_220--Hb_001021_110 Hb_055147_010 Hb_055147_010 Hb_000111_220--Hb_055147_010 Hb_003793_020--Hb_004604_020 Hb_003793_020--Hb_000009_260 Hb_003793_020--Hb_047923_020 Hb_003793_020--Hb_004044_060 Hb_003793_020--Hb_102408_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0517355 0.00775206 0 0.010458 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00743473 0

CAGE analysis