Hb_009773_040

Information

Type -
Description -
Location Contig9773: 50204-50407
Sequence    

Annotation

kegg
ID rcu:RCOM_0216640
description hypothetical protein
nr
ID XP_002532121.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1K2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0216640 PE=4 SV=1
Gene Ontology
ID GO:0004812
description methionyl-trna synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009773_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_181810_010 0.1807442613 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
3 Hb_005568_060 0.1943572269 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
4 Hb_016404_010 0.1956707494 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_003939_020 0.2059716573 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
6 Hb_012423_020 0.2062200101 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
7 Hb_136027_010 0.2067778349 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_000796_200 0.2104181921 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
9 Hb_000230_210 0.2121067051 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
10 Hb_000016_220 0.2122322915 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
11 Hb_000819_040 0.2141068948 - - ATP binding protein, putative [Ricinus communis]
12 Hb_102100_010 0.2144371662 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_009247_020 0.2164917534 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
14 Hb_015481_010 0.2165359165 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
15 Hb_001846_040 0.2174029642 - - cytochrome P450, putative [Ricinus communis]
16 Hb_010589_130 0.2189299719 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
17 Hb_000563_460 0.2212415253 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
18 Hb_000045_140 0.2217406157 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
19 Hb_006483_050 0.2221334255 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
20 Hb_000836_590 0.2263885512 - - hypothetical protein JCGZ_14318 [Jatropha curcas]

Gene co-expression network

sample Hb_009773_040 Hb_009773_040 Hb_181810_010 Hb_181810_010 Hb_009773_040--Hb_181810_010 Hb_005568_060 Hb_005568_060 Hb_009773_040--Hb_005568_060 Hb_016404_010 Hb_016404_010 Hb_009773_040--Hb_016404_010 Hb_003939_020 Hb_003939_020 Hb_009773_040--Hb_003939_020 Hb_012423_020 Hb_012423_020 Hb_009773_040--Hb_012423_020 Hb_136027_010 Hb_136027_010 Hb_009773_040--Hb_136027_010 Hb_010964_010 Hb_010964_010 Hb_181810_010--Hb_010964_010 Hb_000819_040 Hb_000819_040 Hb_181810_010--Hb_000819_040 Hb_004032_220 Hb_004032_220 Hb_181810_010--Hb_004032_220 Hb_000340_060 Hb_000340_060 Hb_181810_010--Hb_000340_060 Hb_000059_260 Hb_000059_260 Hb_181810_010--Hb_000059_260 Hb_002960_100 Hb_002960_100 Hb_181810_010--Hb_002960_100 Hb_181824_010 Hb_181824_010 Hb_005568_060--Hb_181824_010 Hb_001846_040 Hb_001846_040 Hb_005568_060--Hb_001846_040 Hb_004787_100 Hb_004787_100 Hb_005568_060--Hb_004787_100 Hb_005568_060--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_005568_060--Hb_009247_020 Hb_006483_050 Hb_006483_050 Hb_005568_060--Hb_006483_050 Hb_016404_010--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_016404_010--Hb_000506_140 Hb_000796_200 Hb_000796_200 Hb_016404_010--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_016404_010--Hb_002311_490 Hb_000465_330 Hb_000465_330 Hb_016404_010--Hb_000465_330 Hb_000836_590 Hb_000836_590 Hb_003939_020--Hb_000836_590 Hb_002374_330 Hb_002374_330 Hb_003939_020--Hb_002374_330 Hb_003228_070 Hb_003228_070 Hb_003939_020--Hb_003228_070 Hb_158803_020 Hb_158803_020 Hb_003939_020--Hb_158803_020 Hb_003939_020--Hb_181810_010 Hb_012423_020--Hb_000796_200 Hb_012423_020--Hb_009247_020 Hb_012423_020--Hb_136027_010 Hb_012423_020--Hb_000506_140 Hb_012423_020--Hb_016404_010 Hb_000563_460 Hb_000563_460 Hb_012423_020--Hb_000563_460 Hb_003582_020 Hb_003582_020 Hb_136027_010--Hb_003582_020 Hb_035391_010 Hb_035391_010 Hb_136027_010--Hb_035391_010 Hb_136027_010--Hb_009247_020 Hb_136027_010--Hb_001846_040 Hb_136027_010--Hb_000796_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.891 2687.54 583.121 276.441 338.65 56.4794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01622 10.8164 7.1151 1.00502 28.172

CAGE analysis