Hb_002374_330

Information

Type -
Description -
Location Contig2374: 288081-291461
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_330 0.0 - - -
2 Hb_002157_250 0.2161013467 - - Pectinesterase-4 precursor, putative [Ricinus communis]
3 Hb_074184_010 0.2259859695 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_008203_020 0.2355733972 - - protein kinase, putative [Ricinus communis]
5 Hb_000540_220 0.2355920139 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
6 Hb_003939_020 0.2404513421 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
7 Hb_011161_030 0.2408019804 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
8 Hb_003226_080 0.2504613773 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
9 Hb_000172_490 0.2562899706 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
10 Hb_009773_040 0.2601959304 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001196_080 0.2624493345 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
12 Hb_181810_010 0.2641820002 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
13 Hb_000836_590 0.2675096057 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
14 Hb_000284_180 0.269684902 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
15 Hb_163508_010 0.269950836 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
16 Hb_015481_010 0.2704080083 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
17 Hb_000225_050 0.2709584979 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_007951_120 0.2714221612 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
19 Hb_000692_120 0.2714763196 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
20 Hb_001059_090 0.2725581444 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_330 Hb_002374_330 Hb_002157_250 Hb_002157_250 Hb_002374_330--Hb_002157_250 Hb_074184_010 Hb_074184_010 Hb_002374_330--Hb_074184_010 Hb_008203_020 Hb_008203_020 Hb_002374_330--Hb_008203_020 Hb_000540_220 Hb_000540_220 Hb_002374_330--Hb_000540_220 Hb_003939_020 Hb_003939_020 Hb_002374_330--Hb_003939_020 Hb_011161_030 Hb_011161_030 Hb_002374_330--Hb_011161_030 Hb_027402_040 Hb_027402_040 Hb_002157_250--Hb_027402_040 Hb_001196_080 Hb_001196_080 Hb_002157_250--Hb_001196_080 Hb_000692_120 Hb_000692_120 Hb_002157_250--Hb_000692_120 Hb_001950_020 Hb_001950_020 Hb_002157_250--Hb_001950_020 Hb_002445_130 Hb_002445_130 Hb_002157_250--Hb_002445_130 Hb_074184_010--Hb_008203_020 Hb_029689_010 Hb_029689_010 Hb_074184_010--Hb_029689_010 Hb_065755_020 Hb_065755_020 Hb_074184_010--Hb_065755_020 Hb_032202_050 Hb_032202_050 Hb_074184_010--Hb_032202_050 Hb_000221_230 Hb_000221_230 Hb_074184_010--Hb_000221_230 Hb_004495_010 Hb_004495_010 Hb_074184_010--Hb_004495_010 Hb_114674_010 Hb_114674_010 Hb_008203_020--Hb_114674_010 Hb_007951_120 Hb_007951_120 Hb_008203_020--Hb_007951_120 Hb_115513_030 Hb_115513_030 Hb_008203_020--Hb_115513_030 Hb_007188_060 Hb_007188_060 Hb_008203_020--Hb_007188_060 Hb_015928_020 Hb_015928_020 Hb_008203_020--Hb_015928_020 Hb_163508_010 Hb_163508_010 Hb_000540_220--Hb_163508_010 Hb_002965_070 Hb_002965_070 Hb_000540_220--Hb_002965_070 Hb_000164_090 Hb_000164_090 Hb_000540_220--Hb_000164_090 Hb_000540_220--Hb_007188_060 Hb_000540_220--Hb_000221_230 Hb_000563_510 Hb_000563_510 Hb_000540_220--Hb_000563_510 Hb_009773_040 Hb_009773_040 Hb_003939_020--Hb_009773_040 Hb_000836_590 Hb_000836_590 Hb_003939_020--Hb_000836_590 Hb_003228_070 Hb_003228_070 Hb_003939_020--Hb_003228_070 Hb_158803_020 Hb_158803_020 Hb_003939_020--Hb_158803_020 Hb_181810_010 Hb_181810_010 Hb_003939_020--Hb_181810_010 Hb_129459_010 Hb_129459_010 Hb_011161_030--Hb_129459_010 Hb_034310_010 Hb_034310_010 Hb_011161_030--Hb_034310_010 Hb_011161_030--Hb_004495_010 Hb_011161_030--Hb_074184_010 Hb_000172_490 Hb_000172_490 Hb_011161_030--Hb_000172_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0110511 0.232102 0.161731 0.033687 0.0834957 0.0290309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00787502 0

CAGE analysis