Hb_002157_250

Information

Type -
Description -
Location Contig2157: 135594-137388
Sequence    

Annotation

kegg
ID rcu:RCOM_1412190
description Pectinesterase-4 precursor, putative (EC:3.1.1.11)
nr
ID XP_002528620.1
description Pectinesterase-4 precursor, putative [Ricinus communis]
swissprot
ID O80722
description Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1
trembl
ID B9SRK1
description Pectinesterase-4, putative OS=Ricinus communis GN=RCOM_1412190 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_250 0.0 - - Pectinesterase-4 precursor, putative [Ricinus communis]
2 Hb_027402_040 0.2146901637 - - Thioredoxin II, putative [Ricinus communis]
3 Hb_002374_330 0.2161013467 - - -
4 Hb_001196_080 0.2408253207 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
5 Hb_000692_120 0.2418536657 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
6 Hb_001950_020 0.250831084 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
7 Hb_002445_130 0.255945162 - - Disease resistance protein RGA2, putative [Ricinus communis]
8 Hb_003119_050 0.2562770463 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
9 Hb_001059_090 0.2568738268 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
10 Hb_003226_080 0.2580298599 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
11 Hb_143863_010 0.2607217096 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
12 Hb_069841_010 0.2631413502 - - resistance protein [Quercus suber]
13 Hb_163508_010 0.263225329 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
14 Hb_091226_010 0.2651000724 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
15 Hb_000834_240 0.2661130434 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
16 Hb_000221_230 0.2666863767 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
17 Hb_005548_030 0.2671287364 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
18 Hb_004920_030 0.2673743355 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1 [Jatropha curcas]
19 Hb_008246_090 0.2679713309 - - -
20 Hb_001258_150 0.2680550798 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_002157_250 Hb_002157_250 Hb_027402_040 Hb_027402_040 Hb_002157_250--Hb_027402_040 Hb_002374_330 Hb_002374_330 Hb_002157_250--Hb_002374_330 Hb_001196_080 Hb_001196_080 Hb_002157_250--Hb_001196_080 Hb_000692_120 Hb_000692_120 Hb_002157_250--Hb_000692_120 Hb_001950_020 Hb_001950_020 Hb_002157_250--Hb_001950_020 Hb_002445_130 Hb_002445_130 Hb_002157_250--Hb_002445_130 Hb_003119_050 Hb_003119_050 Hb_027402_040--Hb_003119_050 Hb_003228_030 Hb_003228_030 Hb_027402_040--Hb_003228_030 Hb_005054_310 Hb_005054_310 Hb_027402_040--Hb_005054_310 Hb_163508_010 Hb_163508_010 Hb_027402_040--Hb_163508_010 Hb_000836_370 Hb_000836_370 Hb_027402_040--Hb_000836_370 Hb_005000_300 Hb_005000_300 Hb_027402_040--Hb_005000_300 Hb_074184_010 Hb_074184_010 Hb_002374_330--Hb_074184_010 Hb_008203_020 Hb_008203_020 Hb_002374_330--Hb_008203_020 Hb_000540_220 Hb_000540_220 Hb_002374_330--Hb_000540_220 Hb_003939_020 Hb_003939_020 Hb_002374_330--Hb_003939_020 Hb_011161_030 Hb_011161_030 Hb_002374_330--Hb_011161_030 Hb_001196_080--Hb_000692_120 Hb_000671_060 Hb_000671_060 Hb_001196_080--Hb_000671_060 Hb_069841_010 Hb_069841_010 Hb_001196_080--Hb_069841_010 Hb_003090_150 Hb_003090_150 Hb_001196_080--Hb_003090_150 Hb_001196_080--Hb_005054_310 Hb_002311_140 Hb_002311_140 Hb_001196_080--Hb_002311_140 Hb_000692_120--Hb_005054_310 Hb_005000_140 Hb_005000_140 Hb_000692_120--Hb_005000_140 Hb_000692_120--Hb_003228_030 Hb_000890_010 Hb_000890_010 Hb_000692_120--Hb_000890_010 Hb_000692_120--Hb_000836_370 Hb_000834_240 Hb_000834_240 Hb_001950_020--Hb_000834_240 Hb_001950_020--Hb_069841_010 Hb_001114_230 Hb_001114_230 Hb_001950_020--Hb_001114_230 Hb_012258_020 Hb_012258_020 Hb_001950_020--Hb_012258_020 Hb_001950_020--Hb_001196_080 Hb_005568_130 Hb_005568_130 Hb_001950_020--Hb_005568_130 Hb_000805_040 Hb_000805_040 Hb_002445_130--Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_002445_130--Hb_001863_270 Hb_000610_060 Hb_000610_060 Hb_002445_130--Hb_000610_060 Hb_001989_060 Hb_001989_060 Hb_002445_130--Hb_001989_060 Hb_033327_010 Hb_033327_010 Hb_002445_130--Hb_033327_010 Hb_002122_030 Hb_002122_030 Hb_002445_130--Hb_002122_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0569771 0.456949 0.240324 0.0654188 0.172496 0.0316902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0548768 0.0215877 0 0.00860451 0

CAGE analysis