Hb_002445_130

Information

Type -
Description -
Location Contig2445: 262324-262536
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002526758.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SL89
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1292200 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance protein rga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002445_130 0.0 - - Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_000805_040 0.1425368759 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
3 Hb_001863_270 0.1481812227 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
4 Hb_000610_060 0.1530343826 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
5 Hb_001989_060 0.1597541687 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
6 Hb_033327_010 0.160810286 - - SYM8 [Pisum sativum]
7 Hb_002122_030 0.1610489487 - - -
8 Hb_009040_010 0.1635549241 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
9 Hb_000045_140 0.1666952652 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
10 Hb_004712_160 0.1678241517 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
11 Hb_004586_130 0.1678603145 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007120_010 0.171341232 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
13 Hb_033149_020 0.1720138832 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
14 Hb_000373_250 0.1741805299 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
15 Hb_000283_100 0.176827012 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
16 Hb_000284_180 0.1816554605 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
17 Hb_010126_030 0.1821311005 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
18 Hb_011360_090 0.1837338909 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
19 Hb_002311_150 0.1851514504 - - Protein COBRA precursor, putative [Ricinus communis]
20 Hb_000532_030 0.1857478802 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002445_130 Hb_002445_130 Hb_000805_040 Hb_000805_040 Hb_002445_130--Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_002445_130--Hb_001863_270 Hb_000610_060 Hb_000610_060 Hb_002445_130--Hb_000610_060 Hb_001989_060 Hb_001989_060 Hb_002445_130--Hb_001989_060 Hb_033327_010 Hb_033327_010 Hb_002445_130--Hb_033327_010 Hb_002122_030 Hb_002122_030 Hb_002445_130--Hb_002122_030 Hb_000805_040--Hb_001863_270 Hb_011360_090 Hb_011360_090 Hb_000805_040--Hb_011360_090 Hb_000009_200 Hb_000009_200 Hb_000805_040--Hb_000009_200 Hb_000373_250 Hb_000373_250 Hb_000805_040--Hb_000373_250 Hb_007120_010 Hb_007120_010 Hb_000805_040--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_000805_040--Hb_011930_120 Hb_001863_270--Hb_007120_010 Hb_001863_270--Hb_001989_060 Hb_001863_270--Hb_000373_250 Hb_001863_270--Hb_011360_090 Hb_002053_030 Hb_002053_030 Hb_001863_270--Hb_002053_030 Hb_033149_020 Hb_033149_020 Hb_000610_060--Hb_033149_020 Hb_007574_050 Hb_007574_050 Hb_000610_060--Hb_007574_050 Hb_008103_100 Hb_008103_100 Hb_000610_060--Hb_008103_100 Hb_004712_160 Hb_004712_160 Hb_000610_060--Hb_004712_160 Hb_011689_100 Hb_011689_100 Hb_000610_060--Hb_011689_100 Hb_001053_200 Hb_001053_200 Hb_000610_060--Hb_001053_200 Hb_000283_100 Hb_000283_100 Hb_001989_060--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_001989_060--Hb_010126_030 Hb_001989_060--Hb_007120_010 Hb_001989_060--Hb_011930_120 Hb_004586_130 Hb_004586_130 Hb_001989_060--Hb_004586_130 Hb_000680_180 Hb_000680_180 Hb_001989_060--Hb_000680_180 Hb_000284_170 Hb_000284_170 Hb_033327_010--Hb_000284_170 Hb_033327_010--Hb_007120_010 Hb_000594_110 Hb_000594_110 Hb_033327_010--Hb_000594_110 Hb_005048_120 Hb_005048_120 Hb_033327_010--Hb_005048_120 Hb_000284_180 Hb_000284_180 Hb_033327_010--Hb_000284_180 Hb_010142_040 Hb_010142_040 Hb_033327_010--Hb_010142_040 Hb_001246_160 Hb_001246_160 Hb_002122_030--Hb_001246_160 Hb_002122_030--Hb_000009_200 Hb_002122_030--Hb_000805_040 Hb_005714_100 Hb_005714_100 Hb_002122_030--Hb_005714_100 Hb_002122_030--Hb_011689_100 Hb_002122_030--Hb_004712_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78287 48.3651 21.1789 15.5018 4.1744 0.680998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45629 1.79127 0 2.0967 3.17222

CAGE analysis