Hb_000283_100

Information

Type -
Description -
Location Contig283: 110229-116111
Sequence    

Annotation

kegg
ID rcu:RCOM_0484420
description ring finger protein, putative
nr
ID XP_012089275.1
description PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
swissprot
ID Q94AY3
description E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1
trembl
ID A0A067JLH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23506 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin protein ligase drip2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29600: 114183-114546 , PASA_asmbl_29601: 110420-116188 , PASA_asmbl_29602: 114556-115001 , PASA_asmbl_29603: 115133-115319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_100 0.0 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
2 Hb_010126_030 0.0619119985 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
3 Hb_001989_060 0.0853374568 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
4 Hb_004586_130 0.0926720881 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000045_140 0.1183825009 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
6 Hb_000680_180 0.1186650112 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
7 Hb_000336_060 0.123811639 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
8 Hb_000532_030 0.1253130768 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
9 Hb_124677_020 0.1389590021 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_011930_120 0.1393830121 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
11 Hb_002876_070 0.1411840395 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
12 Hb_000451_040 0.143270404 - - conserved hypothetical protein [Ricinus communis]
13 Hb_061908_030 0.1436480787 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
14 Hb_001999_170 0.1442144527 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
15 Hb_000086_620 0.144588847 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
16 Hb_001863_270 0.1460068957 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
17 Hb_002960_100 0.1468877366 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
18 Hb_000805_040 0.1477186915 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
19 Hb_002007_070 0.1520827046 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
20 Hb_000221_230 0.1544586615 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]

Gene co-expression network

sample Hb_000283_100 Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_000283_100--Hb_010126_030 Hb_001989_060 Hb_001989_060 Hb_000283_100--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_000283_100--Hb_004586_130 Hb_000045_140 Hb_000045_140 Hb_000283_100--Hb_000045_140 Hb_000680_180 Hb_000680_180 Hb_000283_100--Hb_000680_180 Hb_000336_060 Hb_000336_060 Hb_000283_100--Hb_000336_060 Hb_010126_030--Hb_001989_060 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_010126_030--Hb_000680_180 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_001989_060--Hb_011930_120 Hb_001989_060--Hb_004586_130 Hb_001989_060--Hb_000680_180 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_181824_010 Hb_181824_010 Hb_000045_140--Hb_181824_010 Hb_000532_030 Hb_000532_030 Hb_000045_140--Hb_000532_030 Hb_000045_140--Hb_010126_030 Hb_000045_140--Hb_001989_060 Hb_000045_140--Hb_007120_010 Hb_000680_180--Hb_011930_120 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_001579_070 Hb_001579_070 Hb_000680_180--Hb_001579_070 Hb_124677_020 Hb_124677_020 Hb_000336_060--Hb_124677_020 Hb_000336_060--Hb_001999_170 Hb_000336_060--Hb_010126_030 Hb_000984_290 Hb_000984_290 Hb_000336_060--Hb_000984_290 Hb_022137_020 Hb_022137_020 Hb_000336_060--Hb_022137_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.11527 156.058 91.1096 32.022 6.98783 3.80762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.78804 5.47662 8.7252 3.01719 9.80431

CAGE analysis