Hb_002151_130

Information

Type -
Description -
Location Contig2151: 121969-126363
Sequence    

Annotation

kegg
ID rcu:RCOM_0712140
description 12-oxophytodienoate reductase opr, putative (EC:1.3.1.42)
nr
ID AAY27752.1
description 12-oxophytodienoate reductase [Hevea brasiliensis]
swissprot
ID Q9FEW9
description 12-oxophytodienoate reductase 3 OS=Solanum lycopersicum GN=OPR3 PE=1 SV=1
trembl
ID Q4ZJ73
description 12-oxophytodienoate reductase OS=Hevea brasiliensis GN=opr PE=2 SV=1
Gene Ontology
ID GO:0005777
description 12-oxophytodienoate reductase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22254: 122001-126357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002151_130 0.0 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
2 Hb_004586_130 0.098387358 - - conserved hypothetical protein [Ricinus communis]
3 Hb_124677_020 0.1167497546 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
4 Hb_000984_290 0.1201210984 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
5 Hb_061908_030 0.1207383994 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
6 Hb_010126_030 0.1384365248 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
7 Hb_002876_070 0.1428066643 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
8 Hb_000451_040 0.1458844066 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007163_080 0.1458918489 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
10 Hb_005348_090 0.145913424 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
11 Hb_002007_070 0.1459200034 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
12 Hb_000003_240 0.1518035485 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000336_060 0.1519724256 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
14 Hb_001579_070 0.155635716 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
15 Hb_000283_100 0.1568427919 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
16 Hb_000162_130 0.156928564 - - conserved hypothetical protein [Ricinus communis]
17 Hb_155946_030 0.1575291649 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
18 Hb_008020_020 0.1575845318 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
19 Hb_001242_180 0.158208944 - - choline/ethanolamine kinase, putative [Ricinus communis]
20 Hb_000680_180 0.1593796819 - - hypothetical protein JCGZ_15248 [Jatropha curcas]

Gene co-expression network

sample Hb_002151_130 Hb_002151_130 Hb_004586_130 Hb_004586_130 Hb_002151_130--Hb_004586_130 Hb_124677_020 Hb_124677_020 Hb_002151_130--Hb_124677_020 Hb_000984_290 Hb_000984_290 Hb_002151_130--Hb_000984_290 Hb_061908_030 Hb_061908_030 Hb_002151_130--Hb_061908_030 Hb_010126_030 Hb_010126_030 Hb_002151_130--Hb_010126_030 Hb_002876_070 Hb_002876_070 Hb_002151_130--Hb_002876_070 Hb_000283_100 Hb_000283_100 Hb_004586_130--Hb_000283_100 Hb_004586_130--Hb_010126_030 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_004586_130--Hb_002876_070 Hb_001989_060 Hb_001989_060 Hb_004586_130--Hb_001989_060 Hb_000336_060 Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_000260_300 Hb_000260_300 Hb_124677_020--Hb_000260_300 Hb_022137_020 Hb_022137_020 Hb_124677_020--Hb_022137_020 Hb_001999_170 Hb_001999_170 Hb_124677_020--Hb_001999_170 Hb_155946_030 Hb_155946_030 Hb_124677_020--Hb_155946_030 Hb_000451_040 Hb_000451_040 Hb_000984_290--Hb_000451_040 Hb_000984_290--Hb_061908_030 Hb_000172_410 Hb_000172_410 Hb_000984_290--Hb_000172_410 Hb_003078_070 Hb_003078_070 Hb_000984_290--Hb_003078_070 Hb_000984_290--Hb_124677_020 Hb_061908_030--Hb_010126_030 Hb_061908_030--Hb_000451_040 Hb_061908_030--Hb_004586_130 Hb_002960_100 Hb_002960_100 Hb_061908_030--Hb_002960_100 Hb_010126_030--Hb_000283_100 Hb_010126_030--Hb_001989_060 Hb_000680_180 Hb_000680_180 Hb_010126_030--Hb_000680_180 Hb_010126_030--Hb_001999_170 Hb_003207_100 Hb_003207_100 Hb_002876_070--Hb_003207_100 Hb_000272_110 Hb_000272_110 Hb_002876_070--Hb_000272_110 Hb_011930_120 Hb_011930_120 Hb_002876_070--Hb_011930_120 Hb_008020_020 Hb_008020_020 Hb_002876_070--Hb_008020_020 Hb_001246_160 Hb_001246_160 Hb_002876_070--Hb_001246_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.65331 214.672 223.59 65.4392 8.22685 6.49727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8805 14.2075 8.61905 26.6329 9.84366

CAGE analysis