Hb_002960_100

Information

Type -
Description -
Location Contig2960: 87795-99654
Sequence    

Annotation

kegg
ID rcu:RCOM_1598420
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012073772.1
description PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
swissprot
ID Q9SYQ8
description Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3
trembl
ID A0A067KPG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08194 PE=4 SV=1
Gene Ontology
ID GO:0005622
description receptor protein kinase clavata1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30961: 99513-99688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_100 0.0 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
2 Hb_001310_010 0.0977978892 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
3 Hb_010126_030 0.1112714864 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
4 Hb_001999_170 0.132447173 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
5 Hb_061908_030 0.1358574899 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
6 Hb_000059_260 0.139719304 - - PREDICTED: LOW QUALITY PROTEIN: peroxidase 60 [Jatropha curcas]
7 Hb_004612_020 0.1441289869 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
8 Hb_000451_040 0.1467849461 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000283_100 0.1468877366 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
10 Hb_000680_180 0.1529088675 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
11 Hb_000563_510 0.1542966028 - - epoxide hydrolase, putative [Ricinus communis]
12 Hb_181810_010 0.1550128745 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
13 Hb_010964_010 0.1559178952 - - -
14 Hb_164146_020 0.1575180774 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_000984_290 0.1620124584 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
16 Hb_002007_070 0.1627113123 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
17 Hb_001989_060 0.1631626857 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
18 Hb_120011_010 0.1664365978 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_006615_060 0.1689915902 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000336_060 0.1715138465 - - hypothetical protein JCGZ_26632 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_100 Hb_002960_100 Hb_001310_010 Hb_001310_010 Hb_002960_100--Hb_001310_010 Hb_010126_030 Hb_010126_030 Hb_002960_100--Hb_010126_030 Hb_001999_170 Hb_001999_170 Hb_002960_100--Hb_001999_170 Hb_061908_030 Hb_061908_030 Hb_002960_100--Hb_061908_030 Hb_000059_260 Hb_000059_260 Hb_002960_100--Hb_000059_260 Hb_004612_020 Hb_004612_020 Hb_002960_100--Hb_004612_020 Hb_001310_010--Hb_001999_170 Hb_120011_010 Hb_120011_010 Hb_001310_010--Hb_120011_010 Hb_001310_010--Hb_004612_020 Hb_164146_020 Hb_164146_020 Hb_001310_010--Hb_164146_020 Hb_010964_010 Hb_010964_010 Hb_001310_010--Hb_010964_010 Hb_000283_100 Hb_000283_100 Hb_010126_030--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_010126_030--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_010126_030--Hb_004586_130 Hb_010126_030--Hb_061908_030 Hb_000680_180 Hb_000680_180 Hb_010126_030--Hb_000680_180 Hb_010126_030--Hb_001999_170 Hb_001999_170--Hb_010964_010 Hb_000336_060 Hb_000336_060 Hb_001999_170--Hb_000336_060 Hb_005054_330 Hb_005054_330 Hb_001999_170--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_001999_170--Hb_007858_020 Hb_002151_130 Hb_002151_130 Hb_061908_030--Hb_002151_130 Hb_000451_040 Hb_000451_040 Hb_061908_030--Hb_000451_040 Hb_000984_290 Hb_000984_290 Hb_061908_030--Hb_000984_290 Hb_061908_030--Hb_004586_130 Hb_029689_010 Hb_029689_010 Hb_000059_260--Hb_029689_010 Hb_000059_260--Hb_010964_010 Hb_000819_040 Hb_000819_040 Hb_000059_260--Hb_000819_040 Hb_000059_260--Hb_001310_010 Hb_181810_010 Hb_181810_010 Hb_000059_260--Hb_181810_010 Hb_004899_010 Hb_004899_010 Hb_004612_020--Hb_004899_010 Hb_000164_160 Hb_000164_160 Hb_004612_020--Hb_000164_160 Hb_005381_010 Hb_005381_010 Hb_004612_020--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_004612_020--Hb_000069_530 Hb_000627_130 Hb_000627_130 Hb_004612_020--Hb_000627_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150943 3.43153 2.91874 0.532529 0.131979 0.0708262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0158944 0.0125089 0.0843511 0.0767101 0.336232

CAGE analysis