Hb_181810_010

Information

Type -
Description -
Location Contig181810: 50-1815
Sequence    

Annotation

kegg
ID rcu:RCOM_1340960
description transcription factor, putative
nr
ID KDP28396.1
description hypothetical protein JCGZ_14167 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14167 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17702: 825-1899 , PASA_asmbl_17703: 1-1897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181810_010 0.0 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
2 Hb_010964_010 0.137798833 - - -
3 Hb_000819_040 0.1412104889 - - ATP binding protein, putative [Ricinus communis]
4 Hb_004032_220 0.1417659999 - - Calmodulin, putative [Ricinus communis]
5 Hb_000340_060 0.1494723943 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000059_260 0.150252715 - - PREDICTED: LOW QUALITY PROTEIN: peroxidase 60 [Jatropha curcas]
7 Hb_002960_100 0.1550128745 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
8 Hb_007858_020 0.1608151689 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
9 Hb_001999_170 0.1619392975 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
10 Hb_000045_140 0.1638190105 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
11 Hb_015481_010 0.1644137714 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
12 Hb_000230_210 0.1654193092 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
13 Hb_008143_020 0.1660171478 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
14 Hb_006907_020 0.1669878224 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
15 Hb_001310_010 0.1680063446 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
16 Hb_000836_310 0.1700677462 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
17 Hb_001257_040 0.1706350216 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
18 Hb_000571_030 0.1712455521 - - ammonium transporter, putative [Ricinus communis]
19 Hb_000836_590 0.1752470596 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
20 Hb_010126_030 0.1756429086 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_181810_010 Hb_181810_010 Hb_010964_010 Hb_010964_010 Hb_181810_010--Hb_010964_010 Hb_000819_040 Hb_000819_040 Hb_181810_010--Hb_000819_040 Hb_004032_220 Hb_004032_220 Hb_181810_010--Hb_004032_220 Hb_000340_060 Hb_000340_060 Hb_181810_010--Hb_000340_060 Hb_000059_260 Hb_000059_260 Hb_181810_010--Hb_000059_260 Hb_002960_100 Hb_002960_100 Hb_181810_010--Hb_002960_100 Hb_001999_170 Hb_001999_170 Hb_010964_010--Hb_001999_170 Hb_007858_020 Hb_007858_020 Hb_010964_010--Hb_007858_020 Hb_000808_090 Hb_000808_090 Hb_010964_010--Hb_000808_090 Hb_001310_010 Hb_001310_010 Hb_010964_010--Hb_001310_010 Hb_000627_130 Hb_000627_130 Hb_010964_010--Hb_000627_130 Hb_001619_140 Hb_001619_140 Hb_010964_010--Hb_001619_140 Hb_000045_140 Hb_000045_140 Hb_000819_040--Hb_000045_140 Hb_000230_210 Hb_000230_210 Hb_000819_040--Hb_000230_210 Hb_181824_010 Hb_181824_010 Hb_000819_040--Hb_181824_010 Hb_000819_040--Hb_000340_060 Hb_003375_080 Hb_003375_080 Hb_000819_040--Hb_003375_080 Hb_004032_220--Hb_007858_020 Hb_000032_150 Hb_000032_150 Hb_004032_220--Hb_000032_150 Hb_000836_310 Hb_000836_310 Hb_004032_220--Hb_000836_310 Hb_124953_010 Hb_124953_010 Hb_004032_220--Hb_124953_010 Hb_001257_040 Hb_001257_040 Hb_004032_220--Hb_001257_040 Hb_005054_330 Hb_005054_330 Hb_004032_220--Hb_005054_330 Hb_000340_060--Hb_001257_040 Hb_000340_060--Hb_000836_310 Hb_000340_060--Hb_004032_220 Hb_008143_020 Hb_008143_020 Hb_000340_060--Hb_008143_020 Hb_000127_220 Hb_000127_220 Hb_000340_060--Hb_000127_220 Hb_000340_060--Hb_007858_020 Hb_029689_010 Hb_029689_010 Hb_000059_260--Hb_029689_010 Hb_000059_260--Hb_010964_010 Hb_000059_260--Hb_002960_100 Hb_000059_260--Hb_000819_040 Hb_000059_260--Hb_001310_010 Hb_002960_100--Hb_001310_010 Hb_010126_030 Hb_010126_030 Hb_002960_100--Hb_010126_030 Hb_002960_100--Hb_001999_170 Hb_061908_030 Hb_061908_030 Hb_002960_100--Hb_061908_030 Hb_004612_020 Hb_004612_020 Hb_002960_100--Hb_004612_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.553953 27.5526 12.3776 3.37699 1.57109 0.230032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.116731 0.401774 1.03898

CAGE analysis