Hb_000230_210

Information

Type -
Description -
Location Contig230: 240882-241505
Sequence    

Annotation

kegg
ID pop:POPTR_0010s02830g
description POPTRDRAFT_657943; hypothetical protein
nr
ID XP_012069456.1
description PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02055 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24013: 240593-242074
cDNA
(Sanger)
(ID:Location)		 012_J23.ab1: 240593-241243 , 031_M09.ab1: 240593-241349 , 049_M20.ab1: 240595-241253

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_210 0.0 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
2 Hb_000016_220 0.0755755171 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
3 Hb_005618_020 0.1149033678 - - hypothetical protein RCOM_1342750 [Ricinus communis]
4 Hb_022768_010 0.1276057864 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
5 Hb_002849_030 0.1284929947 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
6 Hb_034132_010 0.1295021723 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
7 Hb_106810_010 0.1309149707 - - receptor serine/threonine kinase, putative [Ricinus communis]
8 Hb_035391_010 0.135735614 - - TMV resistance protein N, putative [Ricinus communis]
9 Hb_000340_060 0.1357679627 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006483_050 0.1358276217 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
11 Hb_000819_040 0.1370463324 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000522_120 0.1373756063 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
13 Hb_011287_020 0.1407820892 - - ATP binding protein, putative [Ricinus communis]
14 Hb_005568_060 0.1414319125 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
15 Hb_001846_040 0.1431811891 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000086_600 0.1469125321 - - -
17 Hb_001565_050 0.1479419053 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
18 Hb_016404_010 0.1486029899 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_031862_150 0.15000173 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
20 Hb_000422_050 0.1519048974 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_210 Hb_000230_210 Hb_000016_220 Hb_000016_220 Hb_000230_210--Hb_000016_220 Hb_005618_020 Hb_005618_020 Hb_000230_210--Hb_005618_020 Hb_022768_010 Hb_022768_010 Hb_000230_210--Hb_022768_010 Hb_002849_030 Hb_002849_030 Hb_000230_210--Hb_002849_030 Hb_034132_010 Hb_034132_010 Hb_000230_210--Hb_034132_010 Hb_106810_010 Hb_106810_010 Hb_000230_210--Hb_106810_010 Hb_000016_220--Hb_022768_010 Hb_000016_220--Hb_005618_020 Hb_000016_220--Hb_002849_030 Hb_031862_150 Hb_031862_150 Hb_000016_220--Hb_031862_150 Hb_048538_010 Hb_048538_010 Hb_000016_220--Hb_048538_010 Hb_000086_600 Hb_000086_600 Hb_005618_020--Hb_000086_600 Hb_005618_020--Hb_106810_010 Hb_125201_010 Hb_125201_010 Hb_005618_020--Hb_125201_010 Hb_004586_120 Hb_004586_120 Hb_005618_020--Hb_004586_120 Hb_117602_010 Hb_117602_010 Hb_005618_020--Hb_117602_010 Hb_022768_010--Hb_031862_150 Hb_015978_040 Hb_015978_040 Hb_022768_010--Hb_015978_040 Hb_022768_010--Hb_034132_010 Hb_001565_050 Hb_001565_050 Hb_022768_010--Hb_001565_050 Hb_005946_190 Hb_005946_190 Hb_022768_010--Hb_005946_190 Hb_005725_180 Hb_005725_180 Hb_022768_010--Hb_005725_180 Hb_000347_360 Hb_000347_360 Hb_002849_030--Hb_000347_360 Hb_073870_020 Hb_073870_020 Hb_002849_030--Hb_073870_020 Hb_000322_020 Hb_000322_020 Hb_002849_030--Hb_000322_020 Hb_009189_010 Hb_009189_010 Hb_002849_030--Hb_009189_010 Hb_000422_050 Hb_000422_050 Hb_002849_030--Hb_000422_050 Hb_002849_030--Hb_048538_010 Hb_034132_010--Hb_001565_050 Hb_034132_010--Hb_015978_040 Hb_034132_010--Hb_117602_010 Hb_005843_080 Hb_005843_080 Hb_034132_010--Hb_005843_080 Hb_034132_010--Hb_005725_180 Hb_000836_310 Hb_000836_310 Hb_106810_010--Hb_000836_310 Hb_106810_010--Hb_000086_600 Hb_106810_010--Hb_015978_040 Hb_106810_010--Hb_022768_010 Hb_032966_010 Hb_032966_010 Hb_106810_010--Hb_032966_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
240.368 8705.58 1990.85 668.348 38.2393 32.1397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0109 9.06361 27.4029 114.017 164.367

CAGE analysis