Hb_005618_020

Information

Type -
Description -
Location Contig5618: 20010-20417
Sequence    

Annotation

kegg
ID rcu:RCOM_1342750
description hypothetical protein
nr
ID XP_002515163.1
description hypothetical protein RCOM_1342750 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RN24
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1342750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_020 0.0 - - hypothetical protein RCOM_1342750 [Ricinus communis]
2 Hb_000086_600 0.0625638071 - - -
3 Hb_106810_010 0.0801188432 - - receptor serine/threonine kinase, putative [Ricinus communis]
4 Hb_125201_010 0.0820417289 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
5 Hb_004586_120 0.0868004022 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
6 Hb_117602_010 0.0953561021 - - dimethylaniline monooxygenase, putative [Ricinus communis]
7 Hb_000016_220 0.0961454526 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
8 Hb_001257_040 0.0997969909 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
9 Hb_027506_060 0.1015988009 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
10 Hb_022768_010 0.1037029218 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
11 Hb_009707_010 0.1037643827 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
12 Hb_005843_080 0.1050404911 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_047955_010 0.1058473917 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
14 Hb_048538_010 0.1061483718 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
15 Hb_000347_360 0.1092442694 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
16 Hb_002849_030 0.1092793738 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
17 Hb_031862_150 0.1098966751 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
18 Hb_114932_010 0.110081702 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003582_020 0.1101205774 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
20 Hb_001289_030 0.1109897297 - - syntaxin, plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_005618_020 Hb_005618_020 Hb_000086_600 Hb_000086_600 Hb_005618_020--Hb_000086_600 Hb_106810_010 Hb_106810_010 Hb_005618_020--Hb_106810_010 Hb_125201_010 Hb_125201_010 Hb_005618_020--Hb_125201_010 Hb_004586_120 Hb_004586_120 Hb_005618_020--Hb_004586_120 Hb_117602_010 Hb_117602_010 Hb_005618_020--Hb_117602_010 Hb_000016_220 Hb_000016_220 Hb_005618_020--Hb_000016_220 Hb_000086_600--Hb_117602_010 Hb_009707_010 Hb_009707_010 Hb_000086_600--Hb_009707_010 Hb_114932_010 Hb_114932_010 Hb_000086_600--Hb_114932_010 Hb_005843_080 Hb_005843_080 Hb_000086_600--Hb_005843_080 Hb_147137_020 Hb_147137_020 Hb_000086_600--Hb_147137_020 Hb_000836_310 Hb_000836_310 Hb_106810_010--Hb_000836_310 Hb_106810_010--Hb_000086_600 Hb_015978_040 Hb_015978_040 Hb_106810_010--Hb_015978_040 Hb_022768_010 Hb_022768_010 Hb_106810_010--Hb_022768_010 Hb_032966_010 Hb_032966_010 Hb_106810_010--Hb_032966_010 Hb_125201_010--Hb_009707_010 Hb_125201_010--Hb_004586_120 Hb_000338_020 Hb_000338_020 Hb_125201_010--Hb_000338_020 Hb_157957_010 Hb_157957_010 Hb_125201_010--Hb_157957_010 Hb_125201_010--Hb_114932_010 Hb_000322_020 Hb_000322_020 Hb_004586_120--Hb_000322_020 Hb_001257_040 Hb_001257_040 Hb_004586_120--Hb_001257_040 Hb_000422_050 Hb_000422_050 Hb_004586_120--Hb_000422_050 Hb_001477_080 Hb_001477_080 Hb_004586_120--Hb_001477_080 Hb_001565_050 Hb_001565_050 Hb_117602_010--Hb_001565_050 Hb_117602_010--Hb_005843_080 Hb_189242_010 Hb_189242_010 Hb_117602_010--Hb_189242_010 Hb_034132_010 Hb_034132_010 Hb_117602_010--Hb_034132_010 Hb_142691_010 Hb_142691_010 Hb_117602_010--Hb_142691_010 Hb_000230_210 Hb_000230_210 Hb_000016_220--Hb_000230_210 Hb_000016_220--Hb_022768_010 Hb_002849_030 Hb_002849_030 Hb_000016_220--Hb_002849_030 Hb_031862_150 Hb_031862_150 Hb_000016_220--Hb_031862_150 Hb_048538_010 Hb_048538_010 Hb_000016_220--Hb_048538_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.454175 170.852 40.4003 22.6696 0.311291 0.221153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191899 0 0 1.35124 1.86668

CAGE analysis