Hb_004612_020

Information

Type -
Description -
Location Contig4612: 29109-31001
Sequence    

Annotation

kegg
ID rcu:RCOM_0781570
description hypothetical protein
nr
ID XP_011015152.1
description PREDICTED: tetraspanin-8-like [Populus euphratica]
swissprot
ID Q8S8Q6
description Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1
trembl
ID B9SQE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0781570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43740: 29193-31224 , PASA_asmbl_43741: 29843-30532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004612_020 0.0 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
2 Hb_004899_010 0.0847085361 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
3 Hb_000164_160 0.1011137608 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
4 Hb_001310_010 0.1031546375 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
5 Hb_005381_010 0.1078972197 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
6 Hb_000069_530 0.1126628109 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
7 Hb_000627_130 0.1128575595 - - Polcalcin Jun o, putative [Ricinus communis]
8 Hb_000172_410 0.1174234957 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_001999_170 0.1192106251 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
10 Hb_120011_010 0.1199373149 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_001153_250 0.1199418345 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
12 Hb_005054_330 0.1223553045 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
13 Hb_000256_180 0.1230183873 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
14 Hb_000808_090 0.1252236256 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
15 Hb_002133_010 0.1273935697 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
16 Hb_182167_010 0.1288052585 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
17 Hb_000665_090 0.1323887148 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000592_070 0.1331325411 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
19 Hb_006615_060 0.1336960856 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002007_070 0.1350343153 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004612_020 Hb_004612_020 Hb_004899_010 Hb_004899_010 Hb_004612_020--Hb_004899_010 Hb_000164_160 Hb_000164_160 Hb_004612_020--Hb_000164_160 Hb_001310_010 Hb_001310_010 Hb_004612_020--Hb_001310_010 Hb_005381_010 Hb_005381_010 Hb_004612_020--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_004612_020--Hb_000069_530 Hb_000627_130 Hb_000627_130 Hb_004612_020--Hb_000627_130 Hb_004899_010--Hb_000164_160 Hb_005054_330 Hb_005054_330 Hb_004899_010--Hb_005054_330 Hb_001153_250 Hb_001153_250 Hb_004899_010--Hb_001153_250 Hb_000959_240 Hb_000959_240 Hb_004899_010--Hb_000959_240 Hb_008651_010 Hb_008651_010 Hb_004899_010--Hb_008651_010 Hb_000164_160--Hb_005054_330 Hb_002542_030 Hb_002542_030 Hb_000164_160--Hb_002542_030 Hb_002289_180 Hb_002289_180 Hb_000164_160--Hb_002289_180 Hb_000164_160--Hb_000627_130 Hb_008637_020 Hb_008637_020 Hb_000164_160--Hb_008637_020 Hb_001999_170 Hb_001999_170 Hb_001310_010--Hb_001999_170 Hb_120011_010 Hb_120011_010 Hb_001310_010--Hb_120011_010 Hb_002960_100 Hb_002960_100 Hb_001310_010--Hb_002960_100 Hb_164146_020 Hb_164146_020 Hb_001310_010--Hb_164146_020 Hb_010964_010 Hb_010964_010 Hb_001310_010--Hb_010964_010 Hb_005381_010--Hb_000069_530 Hb_121540_010 Hb_121540_010 Hb_005381_010--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_005381_010--Hb_003060_150 Hb_182167_010 Hb_182167_010 Hb_005381_010--Hb_182167_010 Hb_001660_080 Hb_001660_080 Hb_005381_010--Hb_001660_080 Hb_077694_010 Hb_077694_010 Hb_005381_010--Hb_077694_010 Hb_000069_530--Hb_003060_150 Hb_000069_530--Hb_121540_010 Hb_000069_530--Hb_077694_010 Hb_000592_070 Hb_000592_070 Hb_000069_530--Hb_000592_070 Hb_000069_530--Hb_001660_080 Hb_007858_020 Hb_007858_020 Hb_000627_130--Hb_007858_020 Hb_124953_010 Hb_124953_010 Hb_000627_130--Hb_124953_010 Hb_029664_010 Hb_029664_010 Hb_000627_130--Hb_029664_010 Hb_000627_130--Hb_001153_250 Hb_109591_010 Hb_109591_010 Hb_000627_130--Hb_109591_010 Hb_000627_130--Hb_005054_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.27775 1813.95 1754.62 563.262 33.4659 14.6694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.04931 6.62079 10.8663 15.0672 105.638

CAGE analysis