Hb_001579_070

Information

Type -
Description -
Location Contig1579: 48825-49706
Sequence    

Annotation

kegg
ID rcu:RCOM_0528120
description hypothetical protein
nr
ID XP_012085387.1
description PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17746 PE=4 SV=1
Gene Ontology
ID GO:0006950
description at1g70420 f17o7_4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13816: 48606-49904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_070 0.0 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
2 Hb_011930_120 0.0964474715 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
3 Hb_000003_240 0.1095502851 - - conserved hypothetical protein [Ricinus communis]
4 Hb_155946_030 0.1133617724 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
5 Hb_001519_060 0.1153388255 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000680_180 0.123629718 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
7 Hb_031108_010 0.1344716267 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
8 Hb_001242_180 0.1375407499 - - choline/ethanolamine kinase, putative [Ricinus communis]
9 Hb_000162_130 0.1400432046 - - conserved hypothetical protein [Ricinus communis]
10 Hb_124677_020 0.1405140431 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_002007_070 0.1439266834 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
12 Hb_002876_070 0.1476786119 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
13 Hb_000086_620 0.1484288108 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
14 Hb_006018_050 0.1529159976 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
15 Hb_002217_190 0.153358358 - - invertase [Hevea brasiliensis]
16 Hb_119316_020 0.1535924173 - - -
17 Hb_000959_020 0.1538284993 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_094437_050 0.1539841918 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
19 Hb_004586_130 0.1546585153 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001294_050 0.1550475518 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]

Gene co-expression network

sample Hb_001579_070 Hb_001579_070 Hb_011930_120 Hb_011930_120 Hb_001579_070--Hb_011930_120 Hb_000003_240 Hb_000003_240 Hb_001579_070--Hb_000003_240 Hb_155946_030 Hb_155946_030 Hb_001579_070--Hb_155946_030 Hb_001519_060 Hb_001519_060 Hb_001579_070--Hb_001519_060 Hb_000680_180 Hb_000680_180 Hb_001579_070--Hb_000680_180 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010 Hb_011930_120--Hb_000680_180 Hb_000086_620 Hb_000086_620 Hb_011930_120--Hb_000086_620 Hb_001989_060 Hb_001989_060 Hb_011930_120--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_011930_120--Hb_000805_040 Hb_002498_250 Hb_002498_250 Hb_011930_120--Hb_002498_250 Hb_001242_180 Hb_001242_180 Hb_000003_240--Hb_001242_180 Hb_000003_240--Hb_000680_180 Hb_002876_070 Hb_002876_070 Hb_000003_240--Hb_002876_070 Hb_000003_240--Hb_001519_060 Hb_000003_240--Hb_011930_120 Hb_000162_130 Hb_000162_130 Hb_155946_030--Hb_000162_130 Hb_124677_020 Hb_124677_020 Hb_155946_030--Hb_124677_020 Hb_000260_300 Hb_000260_300 Hb_155946_030--Hb_000260_300 Hb_155946_030--Hb_031108_010 Hb_007894_020 Hb_007894_020 Hb_155946_030--Hb_007894_020 Hb_007224_010 Hb_007224_010 Hb_001519_060--Hb_007224_010 Hb_001627_010 Hb_001627_010 Hb_001519_060--Hb_001627_010 Hb_002965_080 Hb_002965_080 Hb_001519_060--Hb_002965_080 Hb_001396_120 Hb_001396_120 Hb_001519_060--Hb_001396_120 Hb_002217_190 Hb_002217_190 Hb_001519_060--Hb_002217_190 Hb_010126_030 Hb_010126_030 Hb_000680_180--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_000680_180--Hb_001989_060 Hb_009476_110 Hb_009476_110 Hb_031108_010--Hb_009476_110 Hb_000776_050 Hb_000776_050 Hb_031108_010--Hb_000776_050 Hb_031108_010--Hb_124677_020 Hb_031108_010--Hb_000086_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.80045 173.847 161.093 86.0575 4.9454 3.72432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5744 26.7222 11.3333 7.8983 27.254

CAGE analysis