Hb_000086_620

Information

Type -
Description -
Location Contig86: 543935-550886
Sequence    

Annotation

kegg
ID vvi:100248717
description bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like
nr
ID XP_012069163.1
description PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
swissprot
ID P47924
description Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic OS=Arabidopsis thaliana GN=RIBA1 PE=1 SV=2
trembl
ID A0A067L8V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24929 PE=3 SV=1
Gene Ontology
ID GO:0009570
description bifunctional riboflavin biosynthesis protein riba chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60777: 543833-549555 , PASA_asmbl_60778: 544647-545184 , PASA_asmbl_60780: 548804-549124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_620 0.0 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
2 Hb_001623_410 0.0902948485 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
3 Hb_011930_120 0.1044379858 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
4 Hb_001989_060 0.1276469308 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
5 Hb_001247_010 0.1313042698 - - galactinol synthase [Manihot esculenta]
6 Hb_010126_030 0.1355037534 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
7 Hb_000451_040 0.1357083038 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000318_410 0.1368080226 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
9 Hb_000680_180 0.1371209327 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
10 Hb_000336_060 0.1383195421 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
11 Hb_007193_030 0.1384935298 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
12 Hb_061908_030 0.1389196597 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
13 Hb_002498_250 0.1391454108 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
14 Hb_001369_020 0.1427592024 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
15 Hb_031108_010 0.1434246457 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
16 Hb_000283_100 0.144588847 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
17 Hb_009476_110 0.1453750567 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
18 Hb_001579_070 0.1484288108 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
19 Hb_002876_070 0.1513313943 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
20 Hb_000984_290 0.1520187046 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_620 Hb_000086_620 Hb_001623_410 Hb_001623_410 Hb_000086_620--Hb_001623_410 Hb_011930_120 Hb_011930_120 Hb_000086_620--Hb_011930_120 Hb_001989_060 Hb_001989_060 Hb_000086_620--Hb_001989_060 Hb_001247_010 Hb_001247_010 Hb_000086_620--Hb_001247_010 Hb_010126_030 Hb_010126_030 Hb_000086_620--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_000086_620--Hb_000451_040 Hb_007193_030 Hb_007193_030 Hb_001623_410--Hb_007193_030 Hb_000985_140 Hb_000985_140 Hb_001623_410--Hb_000985_140 Hb_073171_050 Hb_073171_050 Hb_001623_410--Hb_073171_050 Hb_005080_020 Hb_005080_020 Hb_001623_410--Hb_005080_020 Hb_003078_070 Hb_003078_070 Hb_001623_410--Hb_003078_070 Hb_001579_070 Hb_001579_070 Hb_011930_120--Hb_001579_070 Hb_000680_180 Hb_000680_180 Hb_011930_120--Hb_000680_180 Hb_011930_120--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_011930_120--Hb_000805_040 Hb_002498_250 Hb_002498_250 Hb_011930_120--Hb_002498_250 Hb_000283_100 Hb_000283_100 Hb_001989_060--Hb_000283_100 Hb_001989_060--Hb_010126_030 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_004586_130 Hb_004586_130 Hb_001989_060--Hb_004586_130 Hb_001989_060--Hb_000680_180 Hb_000465_100 Hb_000465_100 Hb_001247_010--Hb_000465_100 Hb_097007_020 Hb_097007_020 Hb_001247_010--Hb_097007_020 Hb_000156_080 Hb_000156_080 Hb_001247_010--Hb_000156_080 Hb_005656_200 Hb_005656_200 Hb_001247_010--Hb_005656_200 Hb_003811_030 Hb_003811_030 Hb_001247_010--Hb_003811_030 Hb_010126_030--Hb_000283_100 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_010126_030--Hb_000680_180 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_000984_290 Hb_000984_290 Hb_000451_040--Hb_000984_290 Hb_000451_040--Hb_061908_030 Hb_000451_040--Hb_010126_030 Hb_000451_040--Hb_001989_060 Hb_000451_040--Hb_004586_130 Hb_001898_010 Hb_001898_010 Hb_000451_040--Hb_001898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21316 126.202 80.0752 29.6206 1.90938 1.99797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62192 5.96356 6.0394 8.54475 26.2538

CAGE analysis