Hb_000465_100

Information

Type -
Description -
Location Contig465: 61040-65635
Sequence    

Annotation

kegg
ID rcu:RCOM_1389350
description catalytic, putative (EC:2.4.1.224)
nr
ID XP_002530666.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FFN2
description Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2
trembl
ID B9SXE7
description Catalytic, putative OS=Ricinus communis GN=RCOM_1389350 PE=4 SV=1
Gene Ontology
ID GO:0050508
description probable glycosyltransferase at5g03795

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43956: 60441-60578 , PASA_asmbl_43957: 60606-60945 , PASA_asmbl_43958: 61070-64016 , PASA_asmbl_43960: 64184-65637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_100 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_077995_010 0.1159751849 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
3 Hb_001247_010 0.141450702 - - galactinol synthase [Manihot esculenta]
4 Hb_006907_020 0.1420289917 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
5 Hb_004924_030 0.1467331439 - - -
6 Hb_001345_030 0.1471638783 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
7 Hb_000247_150 0.1472350715 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
8 Hb_001004_010 0.1477561956 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003811_030 0.1544694573 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
10 Hb_003375_080 0.1635099542 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
11 Hb_039650_030 0.1670158631 - - hypothetical protein RCOM_2128750 [Ricinus communis]
12 Hb_002973_040 0.1693401203 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
13 Hb_000347_380 0.1710485006 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_035677_010 0.1711194496 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006873_030 0.1716382196 - - receptor serine/threonine kinase, putative [Ricinus communis]
16 Hb_132840_090 0.1740010127 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
17 Hb_097007_020 0.1750499763 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
18 Hb_015481_010 0.1789969981 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
19 Hb_000059_260 0.1792767779 - - PREDICTED: LOW QUALITY PROTEIN: peroxidase 60 [Jatropha curcas]
20 Hb_006040_070 0.1794136762 - - orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000465_100 Hb_000465_100 Hb_077995_010 Hb_077995_010 Hb_000465_100--Hb_077995_010 Hb_001247_010 Hb_001247_010 Hb_000465_100--Hb_001247_010 Hb_006907_020 Hb_006907_020 Hb_000465_100--Hb_006907_020 Hb_004924_030 Hb_004924_030 Hb_000465_100--Hb_004924_030 Hb_001345_030 Hb_001345_030 Hb_000465_100--Hb_001345_030 Hb_000247_150 Hb_000247_150 Hb_000465_100--Hb_000247_150 Hb_077995_010--Hb_001345_030 Hb_000397_090 Hb_000397_090 Hb_077995_010--Hb_000397_090 Hb_000363_110 Hb_000363_110 Hb_077995_010--Hb_000363_110 Hb_077995_010--Hb_000247_150 Hb_013720_010 Hb_013720_010 Hb_077995_010--Hb_013720_010 Hb_000086_620 Hb_000086_620 Hb_001247_010--Hb_000086_620 Hb_097007_020 Hb_097007_020 Hb_001247_010--Hb_097007_020 Hb_000156_080 Hb_000156_080 Hb_001247_010--Hb_000156_080 Hb_005656_200 Hb_005656_200 Hb_001247_010--Hb_005656_200 Hb_003811_030 Hb_003811_030 Hb_001247_010--Hb_003811_030 Hb_012496_010 Hb_012496_010 Hb_006907_020--Hb_012496_010 Hb_006907_020--Hb_097007_020 Hb_029664_010 Hb_029664_010 Hb_006907_020--Hb_029664_010 Hb_035677_010 Hb_035677_010 Hb_006907_020--Hb_035677_010 Hb_001004_010 Hb_001004_010 Hb_006907_020--Hb_001004_010 Hb_004899_360 Hb_004899_360 Hb_006907_020--Hb_004899_360 Hb_039650_030 Hb_039650_030 Hb_004924_030--Hb_039650_030 Hb_000175_250 Hb_000175_250 Hb_004924_030--Hb_000175_250 Hb_005545_080 Hb_005545_080 Hb_004924_030--Hb_005545_080 Hb_000059_160 Hb_000059_160 Hb_004924_030--Hb_000059_160 Hb_006873_030 Hb_006873_030 Hb_004924_030--Hb_006873_030 Hb_001345_030--Hb_000397_090 Hb_001345_030--Hb_000363_110 Hb_000172_080 Hb_000172_080 Hb_001345_030--Hb_000172_080 Hb_004166_010 Hb_004166_010 Hb_001345_030--Hb_004166_010 Hb_000359_080 Hb_000359_080 Hb_001345_030--Hb_000359_080 Hb_000247_150--Hb_035677_010 Hb_000247_150--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_000247_150--Hb_000331_710 Hb_000247_150--Hb_097007_020 Hb_000247_150--Hb_039650_030 Hb_000247_150--Hb_012496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299488 29.7707 11.2643 2.90502 0.42997 1.02763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0456174 0.143572 0.170117 1.15677 6.29418

CAGE analysis