Hb_005545_080

Information

Type -
Description -
Location Contig5545: 112078-126296
Sequence    

Annotation

kegg
ID tcc:TCM_042542
description Serine-threonine protein kinase, plant-type, putative
nr
ID KDP44793.1
description hypothetical protein JCGZ_01293 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067LC59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01293 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48459: 124384-124845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005545_080 0.0 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
2 Hb_004712_140 0.1330216161 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
3 Hb_000117_110 0.1399760617 - - transferase, putative [Ricinus communis]
4 Hb_004924_030 0.1423139113 - - -
5 Hb_000297_100 0.1424021284 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
6 Hb_010327_010 0.142980451 - - calcium ion binding protein, putative [Ricinus communis]
7 Hb_001677_130 0.1435262091 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
8 Hb_039650_030 0.1467665134 - - hypothetical protein RCOM_2128750 [Ricinus communis]
9 Hb_091913_010 0.1548660394 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
10 Hb_141990_050 0.1577150488 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
11 Hb_000331_710 0.1697808038 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_007328_010 0.1701034912 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
13 Hb_000307_110 0.1701172282 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
14 Hb_001568_060 0.1715826955 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
15 Hb_000398_200 0.1724074752 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
16 Hb_108055_010 0.1766803408 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000029_180 0.1830195415 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
18 Hb_000247_150 0.1847558262 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
19 Hb_041290_030 0.1851387499 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
20 Hb_000165_220 0.1872254572 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_005545_080 Hb_005545_080 Hb_004712_140 Hb_004712_140 Hb_005545_080--Hb_004712_140 Hb_000117_110 Hb_000117_110 Hb_005545_080--Hb_000117_110 Hb_004924_030 Hb_004924_030 Hb_005545_080--Hb_004924_030 Hb_000297_100 Hb_000297_100 Hb_005545_080--Hb_000297_100 Hb_010327_010 Hb_010327_010 Hb_005545_080--Hb_010327_010 Hb_001677_130 Hb_001677_130 Hb_005545_080--Hb_001677_130 Hb_041290_030 Hb_041290_030 Hb_004712_140--Hb_041290_030 Hb_004712_140--Hb_010327_010 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_021596_070 Hb_021596_070 Hb_004712_140--Hb_021596_070 Hb_000398_200 Hb_000398_200 Hb_004712_140--Hb_000398_200 Hb_004712_140--Hb_001677_130 Hb_000117_110--Hb_000398_200 Hb_000117_110--Hb_001677_130 Hb_000117_110--Hb_004712_140 Hb_000117_110--Hb_010327_010 Hb_002218_060 Hb_002218_060 Hb_000117_110--Hb_002218_060 Hb_091913_010 Hb_091913_010 Hb_000117_110--Hb_091913_010 Hb_039650_030 Hb_039650_030 Hb_004924_030--Hb_039650_030 Hb_000175_250 Hb_000175_250 Hb_004924_030--Hb_000175_250 Hb_000059_160 Hb_000059_160 Hb_004924_030--Hb_000059_160 Hb_000465_100 Hb_000465_100 Hb_004924_030--Hb_000465_100 Hb_006873_030 Hb_006873_030 Hb_004924_030--Hb_006873_030 Hb_002284_020 Hb_002284_020 Hb_000297_100--Hb_002284_020 Hb_000307_110 Hb_000307_110 Hb_000297_100--Hb_000307_110 Hb_001568_060 Hb_001568_060 Hb_000297_100--Hb_001568_060 Hb_141990_050 Hb_141990_050 Hb_000297_100--Hb_141990_050 Hb_000297_100--Hb_004712_140 Hb_007371_020 Hb_007371_020 Hb_010327_010--Hb_007371_020 Hb_108055_010 Hb_108055_010 Hb_010327_010--Hb_108055_010 Hb_000003_620 Hb_000003_620 Hb_010327_010--Hb_000003_620 Hb_000146_110 Hb_000146_110 Hb_010327_010--Hb_000146_110 Hb_001677_130--Hb_000398_200 Hb_007328_010 Hb_007328_010 Hb_001677_130--Hb_007328_010 Hb_001677_130--Hb_091913_010 Hb_001677_130--Hb_010327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.298385 0.0392766 0.0142979 0 0.00364258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00717185 0 0.0170324 0.0462016

CAGE analysis