Hb_000175_250

Information

Type -
Description -
Location Contig175: 153626-154361
Sequence    

Annotation

kegg
ID rcu:RCOM_0900030
description Blue copper protein precursor, putative
nr
ID XP_012073173.1
description PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
swissprot
ID P29602
description Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3
trembl
ID A0A067KLQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06138 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_250 0.0 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
2 Hb_039650_030 0.0799867685 - - hypothetical protein RCOM_2128750 [Ricinus communis]
3 Hb_004924_030 0.1166010097 - - -
4 Hb_028841_020 0.1284696403 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
5 Hb_007328_010 0.1395899354 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
6 Hb_012496_010 0.1415799103 - - kinase, putative [Ricinus communis]
7 Hb_141990_050 0.1423004434 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
8 Hb_035677_010 0.1484941798 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001004_010 0.1507742858 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001568_060 0.1516877682 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
11 Hb_008143_020 0.1544550692 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
12 Hb_000247_150 0.1553388455 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
13 Hb_097007_020 0.1592358081 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
14 Hb_000836_310 0.1599747215 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
15 Hb_000127_220 0.1636470776 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
16 Hb_113396_020 0.1639201085 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
17 Hb_006873_030 0.1659925209 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_000522_120 0.1669567413 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
19 Hb_002849_030 0.1731752534 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
20 Hb_091913_010 0.1736419429 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_250 Hb_000175_250 Hb_039650_030 Hb_039650_030 Hb_000175_250--Hb_039650_030 Hb_004924_030 Hb_004924_030 Hb_000175_250--Hb_004924_030 Hb_028841_020 Hb_028841_020 Hb_000175_250--Hb_028841_020 Hb_007328_010 Hb_007328_010 Hb_000175_250--Hb_007328_010 Hb_012496_010 Hb_012496_010 Hb_000175_250--Hb_012496_010 Hb_141990_050 Hb_141990_050 Hb_000175_250--Hb_141990_050 Hb_039650_030--Hb_004924_030 Hb_000247_150 Hb_000247_150 Hb_039650_030--Hb_000247_150 Hb_006873_030 Hb_006873_030 Hb_039650_030--Hb_006873_030 Hb_035677_010 Hb_035677_010 Hb_039650_030--Hb_035677_010 Hb_039650_030--Hb_007328_010 Hb_005545_080 Hb_005545_080 Hb_004924_030--Hb_005545_080 Hb_000059_160 Hb_000059_160 Hb_004924_030--Hb_000059_160 Hb_000465_100 Hb_000465_100 Hb_004924_030--Hb_000465_100 Hb_004924_030--Hb_006873_030 Hb_001568_060 Hb_001568_060 Hb_028841_020--Hb_001568_060 Hb_108802_010 Hb_108802_010 Hb_028841_020--Hb_108802_010 Hb_025030_010 Hb_025030_010 Hb_028841_020--Hb_025030_010 Hb_028841_020--Hb_039650_030 Hb_007433_020 Hb_007433_020 Hb_028841_020--Hb_007433_020 Hb_007328_010--Hb_141990_050 Hb_009189_010 Hb_009189_010 Hb_007328_010--Hb_009189_010 Hb_000522_120 Hb_000522_120 Hb_007328_010--Hb_000522_120 Hb_001677_130 Hb_001677_130 Hb_007328_010--Hb_001677_130 Hb_002849_030 Hb_002849_030 Hb_007328_010--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_007328_010--Hb_073870_020 Hb_012496_010--Hb_035677_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_006907_020 Hb_006907_020 Hb_012496_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_012496_010--Hb_000422_050 Hb_141990_050--Hb_000522_120 Hb_141990_050--Hb_009189_010 Hb_141990_050--Hb_002849_030 Hb_141990_050--Hb_073870_020 Hb_005588_010 Hb_005588_010 Hb_141990_050--Hb_005588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.86425 1.55278 0.242164 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0914493 0 0 0.176204 0.562155

CAGE analysis