Hb_001568_060

Information

Type -
Description -
Location Contig1568: 82546-86391
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03860g
description POPTRDRAFT_903377; hypothetical protein
nr
ID XP_012093059.1
description PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
swissprot
ID Q9C9T2
description Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana GN=SARD1 PE=1 SV=1
trembl
ID A0A067J8P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05915 PE=4 SV=1
Gene Ontology
ID GO:0009617
description calmodulin-binding protein 60-c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13641: 85981-86456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001568_060 0.0 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
2 Hb_028841_020 0.0972322437 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
3 Hb_025030_010 0.1236493383 - - -
4 Hb_007433_020 0.1261467538 - - hypothetical protein VITISV_005320 [Vitis vinifera]
5 Hb_108802_010 0.1339815277 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
6 Hb_005882_020 0.1389617302 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
7 Hb_000322_120 0.1438158991 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
8 Hb_008667_020 0.1443573248 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
9 Hb_002284_020 0.1454811402 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
10 Hb_000297_100 0.146270596 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
11 Hb_141990_050 0.146609452 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
12 Hb_000395_030 0.1485561412 - - oligopeptide transporter, putative [Ricinus communis]
13 Hb_000175_250 0.1516877682 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
14 Hb_021596_070 0.1525518448 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
15 Hb_004712_140 0.1540036148 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
16 Hb_039650_030 0.1580294635 - - hypothetical protein RCOM_2128750 [Ricinus communis]
17 Hb_010327_010 0.1599830753 - - calcium ion binding protein, putative [Ricinus communis]
18 Hb_000522_120 0.160079591 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
19 Hb_055706_010 0.1628949872 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
20 Hb_010962_030 0.1643552319 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001568_060 Hb_001568_060 Hb_028841_020 Hb_028841_020 Hb_001568_060--Hb_028841_020 Hb_025030_010 Hb_025030_010 Hb_001568_060--Hb_025030_010 Hb_007433_020 Hb_007433_020 Hb_001568_060--Hb_007433_020 Hb_108802_010 Hb_108802_010 Hb_001568_060--Hb_108802_010 Hb_005882_020 Hb_005882_020 Hb_001568_060--Hb_005882_020 Hb_000322_120 Hb_000322_120 Hb_001568_060--Hb_000322_120 Hb_028841_020--Hb_108802_010 Hb_028841_020--Hb_025030_010 Hb_000175_250 Hb_000175_250 Hb_028841_020--Hb_000175_250 Hb_039650_030 Hb_039650_030 Hb_028841_020--Hb_039650_030 Hb_028841_020--Hb_007433_020 Hb_051450_010 Hb_051450_010 Hb_025030_010--Hb_051450_010 Hb_001021_110 Hb_001021_110 Hb_025030_010--Hb_001021_110 Hb_025030_010--Hb_007433_020 Hb_000510_350 Hb_000510_350 Hb_025030_010--Hb_000510_350 Hb_008667_020 Hb_008667_020 Hb_007433_020--Hb_008667_020 Hb_021596_070 Hb_021596_070 Hb_007433_020--Hb_021596_070 Hb_019961_010 Hb_019961_010 Hb_007433_020--Hb_019961_010 Hb_001411_150 Hb_001411_150 Hb_007433_020--Hb_001411_150 Hb_011054_030 Hb_011054_030 Hb_007433_020--Hb_011054_030 Hb_111985_060 Hb_111985_060 Hb_007433_020--Hb_111985_060 Hb_003119_030 Hb_003119_030 Hb_108802_010--Hb_003119_030 Hb_108802_010--Hb_025030_010 Hb_175087_010 Hb_175087_010 Hb_108802_010--Hb_175087_010 Hb_108802_010--Hb_001021_110 Hb_055706_010 Hb_055706_010 Hb_005882_020--Hb_055706_010 Hb_005882_020--Hb_000322_120 Hb_089140_020 Hb_089140_020 Hb_005882_020--Hb_089140_020 Hb_000210_150 Hb_000210_150 Hb_005882_020--Hb_000210_150 Hb_002660_090 Hb_002660_090 Hb_005882_020--Hb_002660_090 Hb_000316_150 Hb_000316_150 Hb_005882_020--Hb_000316_150 Hb_000322_120--Hb_002660_090 Hb_002284_020 Hb_002284_020 Hb_000322_120--Hb_002284_020 Hb_000086_610 Hb_000086_610 Hb_000322_120--Hb_000086_610 Hb_001289_030 Hb_001289_030 Hb_000322_120--Hb_001289_030 Hb_002205_260 Hb_002205_260 Hb_000322_120--Hb_002205_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.1015 2.01728 0.38639 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0341373 0.0805666 0.0503002 1.07316 0.559937

CAGE analysis