Hb_000331_710

Information

Type -
Description -
Location Contig331: 531015-532919
Sequence    

Annotation

kegg
ID rcu:RCOM_1507900
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.11.17)
nr
ID XP_002511283.1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q9SKB2
description Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1
trembl
ID B9RAQ8
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis GN=RCOM_1507900 PE=4 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like serine threonine tyrosine-protein kinase sobir1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34837: 532218-532737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_710 0.0 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
2 Hb_013720_010 0.0704717085 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
3 Hb_000027_060 0.0777769539 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
4 Hb_000247_150 0.0905781695 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
5 Hb_000705_130 0.094782548 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004712_140 0.1030442747 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
7 Hb_006698_020 0.1041742782 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
8 Hb_001534_150 0.106623851 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
9 Hb_003914_050 0.110442291 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
10 Hb_004880_100 0.1209594179 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
11 Hb_035677_010 0.1303891736 - - conserved hypothetical protein [Ricinus communis]
12 Hb_041290_030 0.1313784075 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
13 Hb_000397_090 0.1321176022 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
14 Hb_008667_030 0.1323226186 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
15 Hb_030370_070 0.1330829269 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000002_100 0.1333013973 - - phosphate transporter [Manihot esculenta]
17 Hb_008040_060 0.1334585724 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
18 Hb_006052_040 0.134736752 - - pyruvate decarboxylase [Hevea brasiliensis]
19 Hb_008550_030 0.1353318322 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
20 Hb_010921_060 0.1355506109 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000331_710 Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000331_710--Hb_013720_010 Hb_000027_060 Hb_000027_060 Hb_000331_710--Hb_000027_060 Hb_000247_150 Hb_000247_150 Hb_000331_710--Hb_000247_150 Hb_000705_130 Hb_000705_130 Hb_000331_710--Hb_000705_130 Hb_004712_140 Hb_004712_140 Hb_000331_710--Hb_004712_140 Hb_006698_020 Hb_006698_020 Hb_000331_710--Hb_006698_020 Hb_013720_010--Hb_006698_020 Hb_013720_010--Hb_000247_150 Hb_013720_010--Hb_000027_060 Hb_001104_270 Hb_001104_270 Hb_013720_010--Hb_001104_270 Hb_008667_030 Hb_008667_030 Hb_013720_010--Hb_008667_030 Hb_001534_150 Hb_001534_150 Hb_000027_060--Hb_001534_150 Hb_000027_060--Hb_000705_130 Hb_008040_060 Hb_008040_060 Hb_000027_060--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_000027_060--Hb_003914_050 Hb_035677_010 Hb_035677_010 Hb_000247_150--Hb_035677_010 Hb_097007_020 Hb_097007_020 Hb_000247_150--Hb_097007_020 Hb_039650_030 Hb_039650_030 Hb_000247_150--Hb_039650_030 Hb_012496_010 Hb_012496_010 Hb_000247_150--Hb_012496_010 Hb_015882_020 Hb_015882_020 Hb_000705_130--Hb_015882_020 Hb_000705_130--Hb_008040_060 Hb_000705_130--Hb_001534_150 Hb_000522_130 Hb_000522_130 Hb_000705_130--Hb_000522_130 Hb_041290_030 Hb_041290_030 Hb_004712_140--Hb_041290_030 Hb_010327_010 Hb_010327_010 Hb_004712_140--Hb_010327_010 Hb_021596_070 Hb_021596_070 Hb_004712_140--Hb_021596_070 Hb_000398_200 Hb_000398_200 Hb_004712_140--Hb_000398_200 Hb_001677_130 Hb_001677_130 Hb_004712_140--Hb_001677_130 Hb_006698_020--Hb_008667_030 Hb_000000_070 Hb_000000_070 Hb_006698_020--Hb_000000_070 Hb_029866_050 Hb_029866_050 Hb_006698_020--Hb_029866_050 Hb_002529_080 Hb_002529_080 Hb_006698_020--Hb_002529_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.143395 147.969 32.0163 22.1021 0.00981056 0.144349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0952947 0.093724 0.0354981 16.6084 22.547

CAGE analysis