Hb_000692_120

Information

Type -
Description -
Location Contig692: 106442-112218
Sequence    

Annotation

kegg
ID rcu:RCOM_1599410
description ATP synthase subunit beta vacuolar, putative (EC:3.6.3.15)
nr
ID XP_002510596.1
description ATP synthase subunit beta vacuolar, putative [Ricinus communis]
swissprot
ID Q9SZN1
description V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=1 SV=1
trembl
ID B9R8F3
description ATP synthase subunit beta vacuolar, putative OS=Ricinus communis GN=RCOM_1599410 PE=3 SV=1
Gene Ontology
ID GO:0033180
description v-type proton atpase subunit b2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54446: 106379-112369 , PASA_asmbl_54447: 106379-112295 , PASA_asmbl_54448: 111038-111519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_120 0.0 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
2 Hb_001196_080 0.0825074622 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_005054_310 0.1088788745 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
4 Hb_005000_140 0.1397581086 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
5 Hb_003228_030 0.1401212668 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
6 Hb_000890_010 0.1417718724 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000836_370 0.1434894799 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
8 Hb_006132_040 0.1457061335 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
9 Hb_002311_140 0.1459664459 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
10 Hb_000056_300 0.1477189148 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
11 Hb_002609_190 0.1512744486 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
12 Hb_000058_050 0.1512920971 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
13 Hb_021530_010 0.1520451353 - - PREDICTED: la protein 1 [Jatropha curcas]
14 Hb_010368_080 0.1532879262 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
15 Hb_000671_060 0.1550840745 - - protein binding protein, putative [Ricinus communis]
16 Hb_027402_040 0.1557749967 - - Thioredoxin II, putative [Ricinus communis]
17 Hb_000163_230 0.1558960033 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
18 Hb_001484_100 0.1559792271 - - PREDICTED: cyanate hydratase [Jatropha curcas]
19 Hb_003078_030 0.1560159227 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
20 Hb_128695_030 0.1574968547 - - heat shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000692_120 Hb_000692_120 Hb_001196_080 Hb_001196_080 Hb_000692_120--Hb_001196_080 Hb_005054_310 Hb_005054_310 Hb_000692_120--Hb_005054_310 Hb_005000_140 Hb_005000_140 Hb_000692_120--Hb_005000_140 Hb_003228_030 Hb_003228_030 Hb_000692_120--Hb_003228_030 Hb_000890_010 Hb_000890_010 Hb_000692_120--Hb_000890_010 Hb_000836_370 Hb_000836_370 Hb_000692_120--Hb_000836_370 Hb_000671_060 Hb_000671_060 Hb_001196_080--Hb_000671_060 Hb_069841_010 Hb_069841_010 Hb_001196_080--Hb_069841_010 Hb_003090_150 Hb_003090_150 Hb_001196_080--Hb_003090_150 Hb_001196_080--Hb_005054_310 Hb_002311_140 Hb_002311_140 Hb_001196_080--Hb_002311_140 Hb_005054_310--Hb_000836_370 Hb_005054_310--Hb_003228_030 Hb_000056_300 Hb_000056_300 Hb_005054_310--Hb_000056_300 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_001484_100 Hb_001484_100 Hb_005054_310--Hb_001484_100 Hb_156635_020 Hb_156635_020 Hb_005000_140--Hb_156635_020 Hb_000012_210 Hb_000012_210 Hb_005000_140--Hb_000012_210 Hb_152910_010 Hb_152910_010 Hb_005000_140--Hb_152910_010 Hb_004837_220 Hb_004837_220 Hb_005000_140--Hb_004837_220 Hb_005649_090 Hb_005649_090 Hb_005000_140--Hb_005649_090 Hb_001085_300 Hb_001085_300 Hb_005000_140--Hb_001085_300 Hb_000336_110 Hb_000336_110 Hb_003228_030--Hb_000336_110 Hb_005610_080 Hb_005610_080 Hb_003228_030--Hb_005610_080 Hb_003228_030--Hb_000890_010 Hb_006132_040 Hb_006132_040 Hb_003228_030--Hb_006132_040 Hb_003228_030--Hb_000227_310 Hb_000890_010--Hb_006132_040 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_000890_010--Hb_005610_080 Hb_000077_120 Hb_000077_120 Hb_000890_010--Hb_000077_120 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010 Hb_005000_300 Hb_005000_300 Hb_000836_370--Hb_005000_300 Hb_000836_370--Hb_000056_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_003078_030 Hb_003078_030 Hb_000836_370--Hb_003078_030 Hb_000836_370--Hb_001484_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.533 78.197 61.0816 23.2335 30.3658 16.6606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.50277 6.5636 2.89598 17.3369 5.9032

CAGE analysis