Hb_000834_240

Information

Type -
Description -
Location Contig834: 166089-166340
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05860g
description POPTRDRAFT_669299; hypothetical protein
nr
ID KDP33659.1
description hypothetical protein JCGZ_07230 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59890: 166054-166403
cDNA
(Sanger)
(ID:Location)		 042_E01.ab1: 166054-166391 , 050_E04.ab1: 166080-166394

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_240 0.0 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
2 Hb_000836_370 0.1583068328 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
3 Hb_001114_230 0.1618661621 - - -
4 Hb_000152_640 0.1672648226 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
5 Hb_000179_180 0.1707077286 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
6 Hb_001950_020 0.1736974909 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
7 Hb_005054_310 0.1824630823 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
8 Hb_001307_010 0.1827293007 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
9 Hb_016006_010 0.1833640392 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_167381_020 0.1842520863 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
11 Hb_005203_020 0.1846948936 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
12 Hb_001484_100 0.185238778 - - PREDICTED: cyanate hydratase [Jatropha curcas]
13 Hb_170674_010 0.1857746733 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
14 Hb_005000_300 0.1871663628 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
15 Hb_080147_080 0.1872581326 - - peroxiredoxin, putative [Ricinus communis]
16 Hb_000692_120 0.1880922526 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
17 Hb_021576_140 0.1882579572 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
18 Hb_027402_040 0.188313075 - - Thioredoxin II, putative [Ricinus communis]
19 Hb_002326_070 0.1926255622 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
20 Hb_009372_010 0.1931200022 - - -

Gene co-expression network

sample Hb_000834_240 Hb_000834_240 Hb_000836_370 Hb_000836_370 Hb_000834_240--Hb_000836_370 Hb_001114_230 Hb_001114_230 Hb_000834_240--Hb_001114_230 Hb_000152_640 Hb_000152_640 Hb_000834_240--Hb_000152_640 Hb_000179_180 Hb_000179_180 Hb_000834_240--Hb_000179_180 Hb_001950_020 Hb_001950_020 Hb_000834_240--Hb_001950_020 Hb_005054_310 Hb_005054_310 Hb_000834_240--Hb_005054_310 Hb_000836_370--Hb_005054_310 Hb_005000_300 Hb_005000_300 Hb_000836_370--Hb_005000_300 Hb_000056_300 Hb_000056_300 Hb_000836_370--Hb_000056_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_003078_030 Hb_003078_030 Hb_000836_370--Hb_003078_030 Hb_001484_100 Hb_001484_100 Hb_000836_370--Hb_001484_100 Hb_009372_010 Hb_009372_010 Hb_001114_230--Hb_009372_010 Hb_001114_230--Hb_000836_370 Hb_003506_070 Hb_003506_070 Hb_001114_230--Hb_003506_070 Hb_012725_040 Hb_012725_040 Hb_001114_230--Hb_012725_040 Hb_080147_080 Hb_080147_080 Hb_001114_230--Hb_080147_080 Hb_000120_520 Hb_000120_520 Hb_000152_640--Hb_000120_520 Hb_000152_640--Hb_005054_310 Hb_000152_640--Hb_000056_300 Hb_005203_020 Hb_005203_020 Hb_000152_640--Hb_005203_020 Hb_167381_020 Hb_167381_020 Hb_000152_640--Hb_167381_020 Hb_000152_640--Hb_000836_370 Hb_011932_010 Hb_011932_010 Hb_000179_180--Hb_011932_010 Hb_000059_200 Hb_000059_200 Hb_000179_180--Hb_000059_200 Hb_118720_010 Hb_118720_010 Hb_000179_180--Hb_118720_010 Hb_000179_180--Hb_000152_640 Hb_009393_200 Hb_009393_200 Hb_000179_180--Hb_009393_200 Hb_000179_180--Hb_001484_100 Hb_069841_010 Hb_069841_010 Hb_001950_020--Hb_069841_010 Hb_001950_020--Hb_001114_230 Hb_012258_020 Hb_012258_020 Hb_001950_020--Hb_012258_020 Hb_001196_080 Hb_001196_080 Hb_001950_020--Hb_001196_080 Hb_005568_130 Hb_005568_130 Hb_001950_020--Hb_005568_130 Hb_003228_030 Hb_003228_030 Hb_005054_310--Hb_003228_030 Hb_005054_310--Hb_000056_300 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_005054_310--Hb_001484_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
539.845 2406.47 1039.05 772.6 863.876 1136.53
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.747 297.349 29.7375 166.52 75.0139

CAGE analysis