Hb_011932_010

Information

Type -
Description -
Location Contig11932: 1749-2129
Sequence    

Annotation

kegg
ID pmum:103342432
description probable calcium-binding protein CML49
nr
ID XP_012086224.1
description PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
swissprot
ID Q8W4L0
description Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1
trembl
ID A0A067JQC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21125 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml49

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011932_010 0.0 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
2 Hb_000179_180 0.1268311752 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
3 Hb_016006_010 0.1432946693 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000589_060 0.1463453092 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
5 Hb_001484_100 0.1481228153 - - PREDICTED: cyanate hydratase [Jatropha curcas]
6 Hb_005656_080 0.1493489749 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
7 Hb_000205_130 0.1549675003 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_000637_140 0.1570784715 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_000059_200 0.157503957 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
10 Hb_096819_010 0.1624333031 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
11 Hb_000046_080 0.1625319434 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
12 Hb_073973_030 0.164811293 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
13 Hb_002248_130 0.1688822586 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
14 Hb_009270_040 0.1691271333 - - -
15 Hb_003125_070 0.1702675817 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
16 Hb_002902_020 0.1704143569 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
17 Hb_000525_100 0.1729431424 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
18 Hb_070469_010 0.1734052874 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
19 Hb_056987_010 0.174978317 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
20 Hb_000735_050 0.175169571 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]

Gene co-expression network

sample Hb_011932_010 Hb_011932_010 Hb_000179_180 Hb_000179_180 Hb_011932_010--Hb_000179_180 Hb_016006_010 Hb_016006_010 Hb_011932_010--Hb_016006_010 Hb_000589_060 Hb_000589_060 Hb_011932_010--Hb_000589_060 Hb_001484_100 Hb_001484_100 Hb_011932_010--Hb_001484_100 Hb_005656_080 Hb_005656_080 Hb_011932_010--Hb_005656_080 Hb_000205_130 Hb_000205_130 Hb_011932_010--Hb_000205_130 Hb_000059_200 Hb_000059_200 Hb_000179_180--Hb_000059_200 Hb_118720_010 Hb_118720_010 Hb_000179_180--Hb_118720_010 Hb_000152_640 Hb_000152_640 Hb_000179_180--Hb_000152_640 Hb_009393_200 Hb_009393_200 Hb_000179_180--Hb_009393_200 Hb_000179_180--Hb_001484_100 Hb_000099_090 Hb_000099_090 Hb_016006_010--Hb_000099_090 Hb_073973_030 Hb_073973_030 Hb_016006_010--Hb_073973_030 Hb_016006_010--Hb_001484_100 Hb_016006_010--Hb_000589_060 Hb_000890_010 Hb_000890_010 Hb_016006_010--Hb_000890_010 Hb_000589_060--Hb_000179_180 Hb_000589_060--Hb_009393_200 Hb_000122_010 Hb_000122_010 Hb_000589_060--Hb_000122_010 Hb_001486_020 Hb_001486_020 Hb_000589_060--Hb_001486_020 Hb_005054_310 Hb_005054_310 Hb_001484_100--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_001484_100--Hb_000836_370 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_003078_030 Hb_003078_030 Hb_001484_100--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_001484_100--Hb_005649_090 Hb_030545_030 Hb_030545_030 Hb_001484_100--Hb_030545_030 Hb_003605_050 Hb_003605_050 Hb_005656_080--Hb_003605_050 Hb_000186_330 Hb_000186_330 Hb_005656_080--Hb_000186_330 Hb_004725_030 Hb_004725_030 Hb_005656_080--Hb_004725_030 Hb_005656_080--Hb_000059_200 Hb_000077_120 Hb_000077_120 Hb_005656_080--Hb_000077_120 Hb_005656_080--Hb_000205_130 Hb_008387_010 Hb_008387_010 Hb_000205_130--Hb_008387_010 Hb_003912_040 Hb_003912_040 Hb_000205_130--Hb_003912_040 Hb_008568_020 Hb_008568_020 Hb_000205_130--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_000205_130--Hb_003096_060 Hb_002615_120 Hb_002615_120 Hb_000205_130--Hb_002615_120 Hb_000525_100 Hb_000525_100 Hb_000205_130--Hb_000525_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.8617 104.074 97.4726 71.5767 40.6372 127.913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6893 28.5854 5.69648 23.8584 25.5826

CAGE analysis