Hb_000099_090

Information

Type -
Description -
Location Contig99: 95244-99192
Sequence    

Annotation

kegg
ID rcu:RCOM_1689550
description Na(+)/H(+) antiporter, putative
nr
ID XP_002509895.1
description Na(+)/H(+) antiporter, putative [Ricinus communis]
swissprot
ID Q9FFR9
description Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1
trembl
ID B9RCL1
description Na(+)/H(+) antiporter, putative OS=Ricinus communis GN=RCOM_1689550 PE=4 SV=1
Gene Ontology
ID GO:0005770
description cation h(+) antiporter 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64725: 98337-99382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_090 0.0 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
2 Hb_016006_010 0.0802999652 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_073973_030 0.1453878247 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
4 Hb_027472_210 0.1520523207 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
5 Hb_002890_150 0.1569656323 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
6 Hb_000169_190 0.1575896958 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
7 Hb_000890_010 0.1623548831 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001484_100 0.1628700477 - - PREDICTED: cyanate hydratase [Jatropha curcas]
9 Hb_027402_040 0.1664795656 - - Thioredoxin II, putative [Ricinus communis]
10 Hb_005054_310 0.1672867073 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
11 Hb_000077_120 0.1673990062 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
12 Hb_003228_030 0.1683865899 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
13 Hb_000336_110 0.1692775531 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
14 Hb_005610_080 0.1699168876 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001269_200 0.1715508215 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
16 Hb_058551_010 0.1741610669 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_003430_030 0.1770555564 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
18 Hb_000563_330 0.1784453502 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_000363_280 0.1788179641 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
20 Hb_185516_010 0.1797278751 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]

Gene co-expression network

sample Hb_000099_090 Hb_000099_090 Hb_016006_010 Hb_016006_010 Hb_000099_090--Hb_016006_010 Hb_073973_030 Hb_073973_030 Hb_000099_090--Hb_073973_030 Hb_027472_210 Hb_027472_210 Hb_000099_090--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_000099_090--Hb_002890_150 Hb_000169_190 Hb_000169_190 Hb_000099_090--Hb_000169_190 Hb_000890_010 Hb_000890_010 Hb_000099_090--Hb_000890_010 Hb_016006_010--Hb_073973_030 Hb_011932_010 Hb_011932_010 Hb_016006_010--Hb_011932_010 Hb_001484_100 Hb_001484_100 Hb_016006_010--Hb_001484_100 Hb_000589_060 Hb_000589_060 Hb_016006_010--Hb_000589_060 Hb_016006_010--Hb_000890_010 Hb_005656_080 Hb_005656_080 Hb_073973_030--Hb_005656_080 Hb_000077_120 Hb_000077_120 Hb_073973_030--Hb_000077_120 Hb_003581_210 Hb_003581_210 Hb_073973_030--Hb_003581_210 Hb_073973_030--Hb_011932_010 Hb_063805_010 Hb_063805_010 Hb_027472_210--Hb_063805_010 Hb_092337_020 Hb_092337_020 Hb_027472_210--Hb_092337_020 Hb_000563_330 Hb_000563_330 Hb_027472_210--Hb_000563_330 Hb_007083_010 Hb_007083_010 Hb_027472_210--Hb_007083_010 Hb_027472_210--Hb_000169_190 Hb_005291_040 Hb_005291_040 Hb_027472_210--Hb_005291_040 Hb_002890_150--Hb_000077_120 Hb_003849_040 Hb_003849_040 Hb_002890_150--Hb_003849_040 Hb_000985_040 Hb_000985_040 Hb_002890_150--Hb_000985_040 Hb_044155_010 Hb_044155_010 Hb_002890_150--Hb_044155_010 Hb_005054_190 Hb_005054_190 Hb_002890_150--Hb_005054_190 Hb_005610_080 Hb_005610_080 Hb_002890_150--Hb_005610_080 Hb_012184_050 Hb_012184_050 Hb_000169_190--Hb_012184_050 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_007123_070 Hb_007123_070 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010 Hb_006132_040 Hb_006132_040 Hb_000890_010--Hb_006132_040 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_000890_010--Hb_005610_080 Hb_000890_010--Hb_000077_120 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_000890_010--Hb_044155_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.94225 11.5329 13.9758 3.52241 4.967 7.5731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80474 2.97179 0.276033 1.99397 1.03536

CAGE analysis