Hb_188996_010

Information

Type -
Description -
Location Contig188996: 530-3592
Sequence    

Annotation

kegg
ID rcu:RCOM_1325080
description hypothetical protein
nr
ID XP_002520025.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5PQS6
description Protein SMG9 OS=Rattus norvegicus GN=Smg9 PE=2 SV=1
trembl
ID B9S206
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1325080 PE=4 SV=1
Gene Ontology
ID GO:0005525
description protein smg9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18638: 530-3614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188996_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000169_190 0.1258174677 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
3 Hb_007123_070 0.1296084868 - - -
4 Hb_000453_040 0.1341383965 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
5 Hb_003994_140 0.1346827599 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010053_040 0.1396127426 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
7 Hb_003891_070 0.1405125999 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
8 Hb_001195_260 0.1420828803 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
9 Hb_000735_050 0.144091663 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
10 Hb_002026_140 0.1452951668 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
11 Hb_000563_330 0.1459681083 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_007083_010 0.1472428157 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
13 Hb_002928_010 0.1476042514 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
14 Hb_039605_010 0.1478104407 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
15 Hb_022132_010 0.1485176497 - - unknown [Medicago truncatula]
16 Hb_000152_230 0.1509259043 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
17 Hb_001269_200 0.1513119408 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
18 Hb_000983_120 0.1522285964 - - cyclin-dependent protein kinase, putative [Ricinus communis]
19 Hb_058551_010 0.1523667581 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_001195_120 0.1524422944 - - oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_188996_010 Hb_188996_010 Hb_000169_190 Hb_000169_190 Hb_188996_010--Hb_000169_190 Hb_007123_070 Hb_007123_070 Hb_188996_010--Hb_007123_070 Hb_000453_040 Hb_000453_040 Hb_188996_010--Hb_000453_040 Hb_003994_140 Hb_003994_140 Hb_188996_010--Hb_003994_140 Hb_010053_040 Hb_010053_040 Hb_188996_010--Hb_010053_040 Hb_003891_070 Hb_003891_070 Hb_188996_010--Hb_003891_070 Hb_012184_050 Hb_012184_050 Hb_000169_190--Hb_012184_050 Hb_027472_210 Hb_027472_210 Hb_000169_190--Hb_027472_210 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010 Hb_000152_230 Hb_000152_230 Hb_007123_070--Hb_000152_230 Hb_092337_020 Hb_092337_020 Hb_007123_070--Hb_092337_020 Hb_000175_090 Hb_000175_090 Hb_007123_070--Hb_000175_090 Hb_000563_330 Hb_000563_330 Hb_007123_070--Hb_000563_330 Hb_089889_020 Hb_089889_020 Hb_007123_070--Hb_089889_020 Hb_000529_210 Hb_000529_210 Hb_007123_070--Hb_000529_210 Hb_000453_040--Hb_003994_140 Hb_002232_190 Hb_002232_190 Hb_000453_040--Hb_002232_190 Hb_002042_030 Hb_002042_030 Hb_000453_040--Hb_002042_030 Hb_000608_350 Hb_000608_350 Hb_000453_040--Hb_000608_350 Hb_098315_070 Hb_098315_070 Hb_000453_040--Hb_098315_070 Hb_000138_130 Hb_000138_130 Hb_000453_040--Hb_000138_130 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_003994_140--Hb_002042_030 Hb_002965_040 Hb_002965_040 Hb_010053_040--Hb_002965_040 Hb_000735_050 Hb_000735_050 Hb_010053_040--Hb_000735_050 Hb_005000_320 Hb_005000_320 Hb_010053_040--Hb_005000_320 Hb_000637_140 Hb_000637_140 Hb_010053_040--Hb_000637_140 Hb_003038_120 Hb_003038_120 Hb_010053_040--Hb_003038_120 Hb_010053_040--Hb_003891_070 Hb_116349_060 Hb_116349_060 Hb_003891_070--Hb_116349_060 Hb_001269_200 Hb_001269_200 Hb_003891_070--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_003891_070--Hb_001807_010 Hb_003891_070--Hb_002928_010 Hb_003891_070--Hb_000735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.7015 29.7589 64.0957 34.2839 44.0242 37.1258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3661 26.3755 4.9447 7.18079 5.9871

CAGE analysis