Hb_027402_090

Information

Type -
Description -
Location Contig27402: 60598-65450
Sequence    

Annotation

kegg
ID rcu:RCOM_1471630
description endonuclease, putative
nr
ID XP_002514745.1
description endonuclease, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLX6
description Endonuclease, putative OS=Ricinus communis GN=RCOM_1471630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28696: 60661-62814 , PASA_asmbl_28697: 60641-65511 , PASA_asmbl_28698: 62843-65511 , PASA_asmbl_28699: 60634-65020
cDNA
(Sanger)
(ID:Location)		 019_H04.ab1: 60634-65020 , 040_N07.ab1: 60641-65317 , 045_O16.ab1: 60641-65200

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_090 0.0 - - endonuclease, putative [Ricinus communis]
2 Hb_000265_220 0.1162690118 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
3 Hb_002708_020 0.1196256366 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
4 Hb_149838_010 0.1256410495 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
5 Hb_016734_090 0.1317185818 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
6 Hb_000809_210 0.1329354155 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
7 Hb_000169_190 0.1362333878 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
8 Hb_000165_140 0.1385284535 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
9 Hb_002686_330 0.1387804854 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
10 Hb_002783_020 0.1404168441 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
11 Hb_058551_010 0.140774638 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_011915_010 0.1409417896 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
13 Hb_000160_150 0.1411668018 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
14 Hb_027380_030 0.1413602842 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
15 Hb_012184_050 0.1414031438 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
16 Hb_002232_190 0.1418829507 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002783_120 0.1422503291 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
18 Hb_002947_040 0.1431088405 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
19 Hb_002890_150 0.1446213392 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
20 Hb_002092_100 0.1458929113 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_027402_090 Hb_027402_090 Hb_000265_220 Hb_000265_220 Hb_027402_090--Hb_000265_220 Hb_002708_020 Hb_002708_020 Hb_027402_090--Hb_002708_020 Hb_149838_010 Hb_149838_010 Hb_027402_090--Hb_149838_010 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_000169_190 Hb_000169_190 Hb_027402_090--Hb_000169_190 Hb_000265_220--Hb_000809_210 Hb_002896_060 Hb_002896_060 Hb_000265_220--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_000265_220--Hb_027380_030 Hb_011915_010 Hb_011915_010 Hb_000265_220--Hb_011915_010 Hb_000453_140 Hb_000453_140 Hb_000265_220--Hb_000453_140 Hb_002681_170 Hb_002681_170 Hb_000265_220--Hb_002681_170 Hb_000160_150 Hb_000160_150 Hb_002708_020--Hb_000160_150 Hb_002686_330 Hb_002686_330 Hb_002708_020--Hb_002686_330 Hb_008246_030 Hb_008246_030 Hb_002708_020--Hb_008246_030 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_002783_020 Hb_002783_020 Hb_149838_010--Hb_002783_020 Hb_000260_140 Hb_000260_140 Hb_149838_010--Hb_000260_140 Hb_149838_010--Hb_002708_020 Hb_149838_010--Hb_000265_220 Hb_149838_010--Hb_002686_330 Hb_002739_130 Hb_002739_130 Hb_016734_090--Hb_002739_130 Hb_011918_050 Hb_011918_050 Hb_016734_090--Hb_011918_050 Hb_006452_160 Hb_006452_160 Hb_016734_090--Hb_006452_160 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_000563_330 Hb_000563_330 Hb_016734_090--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_016734_090--Hb_000661_020 Hb_000809_210--Hb_002681_170 Hb_000809_210--Hb_011915_010 Hb_000031_290 Hb_000031_290 Hb_000809_210--Hb_000031_290 Hb_002093_030 Hb_002093_030 Hb_000809_210--Hb_002093_030 Hb_002092_100 Hb_002092_100 Hb_000809_210--Hb_002092_100 Hb_012184_050 Hb_012184_050 Hb_000169_190--Hb_012184_050 Hb_027472_210 Hb_027472_210 Hb_000169_190--Hb_027472_210 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_007123_070 Hb_007123_070 Hb_000169_190--Hb_007123_070 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1947 12.1151 34.4863 7.48681 30.3637 21.4102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.41229 4.09355 2.80985 3.73379 7.01843

CAGE analysis