Hb_002708_020

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig2708: 95634-108900
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31330g
description SWIB complex BAF60b domain-containing family protein
nr
ID XP_012089568.1
description PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SIV5
description Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3
trembl
ID A0A067JU74
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01655 PE=4 SV=1
Gene Ontology
ID GO:0003677
description swib complex baf60b domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28406: 50746-108578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002708_020 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
2 Hb_000160_150 0.0948614184 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
3 Hb_002686_330 0.1116569602 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
4 Hb_008246_030 0.1144246396 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
5 Hb_027402_090 0.1196256366 - - endonuclease, putative [Ricinus communis]
6 Hb_002307_350 0.1261404647 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
7 Hb_005408_020 0.1302412999 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004920_060 0.1333443271 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
9 Hb_149838_010 0.1337601434 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
10 Hb_000024_070 0.1370409438 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
11 Hb_007456_010 0.1404204845 - - hypothetical protein L484_003540 [Morus notabilis]
12 Hb_000365_160 0.144223722 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
13 Hb_000363_380 0.1455750059 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
14 Hb_000265_220 0.1467286013 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
15 Hb_002681_170 0.1471566996 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
16 Hb_000021_020 0.1472991893 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
17 Hb_002612_010 0.1478337284 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
18 Hb_012404_070 0.1481400395 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
19 Hb_006915_020 0.1498408345 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
20 Hb_001508_020 0.150031704 - - myosin vIII, putative [Ricinus communis]

Gene co-expression network

sample Hb_002708_020 Hb_002708_020 Hb_000160_150 Hb_000160_150 Hb_002708_020--Hb_000160_150 Hb_002686_330 Hb_002686_330 Hb_002708_020--Hb_002686_330 Hb_008246_030 Hb_008246_030 Hb_002708_020--Hb_008246_030 Hb_027402_090 Hb_027402_090 Hb_002708_020--Hb_027402_090 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_171619_010 Hb_171619_010 Hb_000160_150--Hb_171619_010 Hb_000160_150--Hb_027402_090 Hb_000160_150--Hb_008246_030 Hb_170532_010 Hb_170532_010 Hb_000160_150--Hb_170532_010 Hb_000160_150--Hb_002686_330 Hb_002686_330--Hb_027402_090 Hb_000024_070 Hb_000024_070 Hb_002686_330--Hb_000024_070 Hb_002686_330--Hb_008246_030 Hb_000170_060 Hb_000170_060 Hb_002686_330--Hb_000170_060 Hb_149838_010 Hb_149838_010 Hb_002686_330--Hb_149838_010 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_004920_060 Hb_004920_060 Hb_008246_030--Hb_004920_060 Hb_002612_010 Hb_002612_010 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_017895_020 Hb_017895_020 Hb_008246_030--Hb_017895_020 Hb_000265_220 Hb_000265_220 Hb_027402_090--Hb_000265_220 Hb_027402_090--Hb_149838_010 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_000169_190 Hb_000169_190 Hb_027402_090--Hb_000169_190 Hb_002307_350--Hb_005408_020 Hb_002249_120 Hb_002249_120 Hb_002307_350--Hb_002249_120 Hb_008725_130 Hb_008725_130 Hb_002307_350--Hb_008725_130 Hb_002307_350--Hb_017895_020 Hb_000914_080 Hb_000914_080 Hb_002307_350--Hb_000914_080 Hb_000021_020 Hb_000021_020 Hb_002307_350--Hb_000021_020 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_005408_020--Hb_000914_080 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1671 12.0044 24.2256 7.7525 33.5205 34.1499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.51135 2.15492 2.58041 4.32445 7.48015

CAGE analysis