Hb_000170_060

Information

Type transcription factor
Description TF Family: PHD
Location Contig170: 69073-78163
Sequence    

Annotation

kegg
ID rcu:RCOM_0561470
description DNA binding protein, putative
nr
ID XP_012078337.1
description PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
swissprot
ID O14686
description Histone-lysine N-methyltransferase 2D OS=Homo sapiens GN=KMT2D PE=1 SV=2
trembl
ID A0A067KM46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12166 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring fyve phd-type zinc finger family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15858: 69098-77608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_060 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
2 Hb_003638_010 0.1093099004 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
3 Hb_000363_380 0.1134654697 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
4 Hb_004079_120 0.1218829441 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
5 Hb_002092_100 0.1233959822 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
6 Hb_000024_120 0.1298569218 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
7 Hb_002997_160 0.1314247241 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
8 Hb_001231_030 0.1317539989 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
9 Hb_028872_120 0.132968526 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
10 Hb_003529_130 0.1343846982 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
11 Hb_002571_030 0.1345698486 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
12 Hb_000963_130 0.1361493624 - - RNA m5u methyltransferase, putative [Ricinus communis]
13 Hb_001178_150 0.1371780831 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
14 Hb_007818_040 0.1385103447 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
15 Hb_008246_030 0.1390020314 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
16 Hb_001508_020 0.139047936 - - myosin vIII, putative [Ricinus communis]
17 Hb_002902_020 0.1401613372 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
18 Hb_002301_270 0.1407192399 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_000181_360 0.1409914635 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
20 Hb_000345_490 0.141122288 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000170_060 Hb_000170_060 Hb_003638_010 Hb_003638_010 Hb_000170_060--Hb_003638_010 Hb_000363_380 Hb_000363_380 Hb_000170_060--Hb_000363_380 Hb_004079_120 Hb_004079_120 Hb_000170_060--Hb_004079_120 Hb_002092_100 Hb_002092_100 Hb_000170_060--Hb_002092_100 Hb_000024_120 Hb_000024_120 Hb_000170_060--Hb_000024_120 Hb_002997_160 Hb_002997_160 Hb_000170_060--Hb_002997_160 Hb_002571_030 Hb_002571_030 Hb_003638_010--Hb_002571_030 Hb_007818_040 Hb_007818_040 Hb_003638_010--Hb_007818_040 Hb_007305_020 Hb_007305_020 Hb_003638_010--Hb_007305_020 Hb_009449_090 Hb_009449_090 Hb_003638_010--Hb_009449_090 Hb_003638_010--Hb_000024_120 Hb_006573_160 Hb_006573_160 Hb_003638_010--Hb_006573_160 Hb_008246_030 Hb_008246_030 Hb_000363_380--Hb_008246_030 Hb_017895_020 Hb_017895_020 Hb_000363_380--Hb_017895_020 Hb_028872_120 Hb_028872_120 Hb_000363_380--Hb_028872_120 Hb_003029_130 Hb_003029_130 Hb_000363_380--Hb_003029_130 Hb_001178_150 Hb_001178_150 Hb_000363_380--Hb_001178_150 Hb_000487_220 Hb_000487_220 Hb_000363_380--Hb_000487_220 Hb_000963_130 Hb_000963_130 Hb_004079_120--Hb_000963_130 Hb_002739_130 Hb_002739_130 Hb_004079_120--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_004079_120--Hb_006452_160 Hb_000077_010 Hb_000077_010 Hb_004079_120--Hb_000077_010 Hb_000156_160 Hb_000156_160 Hb_004079_120--Hb_000156_160 Hb_016734_090 Hb_016734_090 Hb_004079_120--Hb_016734_090 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002805_060 Hb_002805_060 Hb_002092_100--Hb_002805_060 Hb_027380_030 Hb_027380_030 Hb_002092_100--Hb_027380_030 Hb_002092_100--Hb_016734_090 Hb_002681_170 Hb_002681_170 Hb_002092_100--Hb_002681_170 Hb_000345_490 Hb_000345_490 Hb_000024_120--Hb_000345_490 Hb_005610_080 Hb_005610_080 Hb_000024_120--Hb_005610_080 Hb_000024_120--Hb_009449_090 Hb_005054_190 Hb_005054_190 Hb_000024_120--Hb_005054_190 Hb_003430_030 Hb_003430_030 Hb_000024_120--Hb_003430_030 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_001231_030 Hb_001231_030 Hb_002997_160--Hb_001231_030 Hb_000753_100 Hb_000753_100 Hb_002997_160--Hb_000753_100 Hb_001117_190 Hb_001117_190 Hb_002997_160--Hb_001117_190 Hb_011909_060 Hb_011909_060 Hb_002997_160--Hb_011909_060 Hb_080147_040 Hb_080147_040 Hb_002997_160--Hb_080147_040 Hb_003929_140 Hb_003929_140 Hb_002997_160--Hb_003929_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6437 23.625 24.1651 5.21045 27.7271 31.0164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83753 3.23795 2.92381 9.95708 16.2979

CAGE analysis