Hb_003638_010

Information

Type transcription factor
Description TF Family: ARID
Location Contig3638: 13572-31993
Sequence    

Annotation

kegg
ID pmum:103337463
description lysine-specific demethylase 5D
nr
ID XP_012086902.1
description PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
swissprot
ID Q6IQX0
description Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2
trembl
ID A0A067JN65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20592 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lysine-specific demethylase 5b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37391: 14029-14476 , PASA_asmbl_37394: 14791-19665 , PASA_asmbl_37395: 20288-31861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_010 0.0 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
2 Hb_002571_030 0.0891562498 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
3 Hb_007818_040 0.0897811913 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
4 Hb_007305_020 0.0924018293 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
5 Hb_009449_090 0.0957348762 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
6 Hb_000024_120 0.0984285846 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
7 Hb_006573_160 0.1009239268 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
8 Hb_000156_160 0.1026349436 - - PREDICTED: urease accessory protein G [Jatropha curcas]
9 Hb_000086_050 0.1030704146 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
10 Hb_000185_150 0.1050245534 - - Heme-binding protein, putative [Ricinus communis]
11 Hb_007283_030 0.1060443763 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
12 Hb_002902_020 0.1063798073 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
13 Hb_000170_060 0.1093099004 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
14 Hb_004079_120 0.1099056268 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
15 Hb_000345_490 0.1106330012 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
16 Hb_005523_020 0.1123900268 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
17 Hb_001959_270 0.1137896718 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_011918_050 0.1149557405 - - -
19 Hb_005054_190 0.1151116176 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
20 Hb_000085_140 0.1155296218 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]

Gene co-expression network

sample Hb_003638_010 Hb_003638_010 Hb_002571_030 Hb_002571_030 Hb_003638_010--Hb_002571_030 Hb_007818_040 Hb_007818_040 Hb_003638_010--Hb_007818_040 Hb_007305_020 Hb_007305_020 Hb_003638_010--Hb_007305_020 Hb_009449_090 Hb_009449_090 Hb_003638_010--Hb_009449_090 Hb_000024_120 Hb_000024_120 Hb_003638_010--Hb_000024_120 Hb_006573_160 Hb_006573_160 Hb_003638_010--Hb_006573_160 Hb_002571_030--Hb_007818_040 Hb_007929_080 Hb_007929_080 Hb_002571_030--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_002571_030--Hb_009771_110 Hb_002571_030--Hb_007305_020 Hb_000523_080 Hb_000523_080 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200 Hb_007283_030 Hb_007283_030 Hb_007818_040--Hb_007283_030 Hb_007576_230 Hb_007576_230 Hb_007818_040--Hb_007576_230 Hb_001959_270 Hb_001959_270 Hb_007818_040--Hb_001959_270 Hb_179154_020 Hb_179154_020 Hb_007818_040--Hb_179154_020 Hb_000377_050 Hb_000377_050 Hb_007818_040--Hb_000377_050 Hb_000086_150 Hb_000086_150 Hb_007305_020--Hb_000086_150 Hb_000205_260 Hb_000205_260 Hb_007305_020--Hb_000205_260 Hb_055235_020 Hb_055235_020 Hb_007305_020--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_007305_020--Hb_007044_110 Hb_005523_020 Hb_005523_020 Hb_007305_020--Hb_005523_020 Hb_007576_220 Hb_007576_220 Hb_009449_090--Hb_007576_220 Hb_005539_040 Hb_005539_040 Hb_009449_090--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_009449_090--Hb_000086_050 Hb_009449_090--Hb_002571_030 Hb_009449_090--Hb_000024_120 Hb_009449_090--Hb_007283_030 Hb_000345_490 Hb_000345_490 Hb_000024_120--Hb_000345_490 Hb_005610_080 Hb_005610_080 Hb_000024_120--Hb_005610_080 Hb_005054_190 Hb_005054_190 Hb_000024_120--Hb_005054_190 Hb_003430_030 Hb_003430_030 Hb_000024_120--Hb_003430_030 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_001153_050 Hb_001153_050 Hb_006573_160--Hb_001153_050 Hb_011972_020 Hb_011972_020 Hb_006573_160--Hb_011972_020 Hb_002814_110 Hb_002814_110 Hb_006573_160--Hb_002814_110 Hb_098209_010 Hb_098209_010 Hb_006573_160--Hb_098209_010 Hb_000302_170 Hb_000302_170 Hb_006573_160--Hb_000302_170 Hb_000102_050 Hb_000102_050 Hb_006573_160--Hb_000102_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.06425 12.7554 13.6655 4.59819 10.7499 10.3615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86938 2.71932 1.65227 4.83129 10.7981

CAGE analysis