Hb_002686_330

Information

Type -
Description -
Location Contig2686: 243292-245922
Sequence    

Annotation

kegg
ID rcu:RCOM_1122510
description hypothetical protein
nr
ID XP_012092715.1
description PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
swissprot
ID Q40251
description Violaxanthin de-epoxidase, chloroplastic OS=Lactuca sativa GN=VDE1 PE=1 SV=1
trembl
ID A0A067J966
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06873 PE=4 SV=1
Gene Ontology
ID GO:0009534
description violaxanthin de- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_330 0.0 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
2 Hb_002708_020 0.1116569602 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
3 Hb_027402_090 0.1387804854 - - endonuclease, putative [Ricinus communis]
4 Hb_000024_070 0.1452515628 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
5 Hb_008246_030 0.1453111517 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
6 Hb_000170_060 0.1499974404 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
7 Hb_149838_010 0.1520196492 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
8 Hb_000045_320 0.1528921661 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
9 Hb_003992_030 0.1540383449 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
10 Hb_002783_020 0.1547075802 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
11 Hb_000160_150 0.1586684686 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
12 Hb_016734_090 0.1662521378 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
13 Hb_002805_170 0.1664916447 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
14 Hb_012184_050 0.1675196569 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
15 Hb_009265_050 0.1702615997 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
16 Hb_007951_100 0.1703373717 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_027380_030 0.1710844829 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
18 Hb_000735_100 0.1722229215 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
19 Hb_000165_140 0.1722458849 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
20 Hb_002612_010 0.1757378908 - - hypothetical protein JCGZ_19269 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_330 Hb_002686_330 Hb_002708_020 Hb_002708_020 Hb_002686_330--Hb_002708_020 Hb_027402_090 Hb_027402_090 Hb_002686_330--Hb_027402_090 Hb_000024_070 Hb_000024_070 Hb_002686_330--Hb_000024_070 Hb_008246_030 Hb_008246_030 Hb_002686_330--Hb_008246_030 Hb_000170_060 Hb_000170_060 Hb_002686_330--Hb_000170_060 Hb_149838_010 Hb_149838_010 Hb_002686_330--Hb_149838_010 Hb_000160_150 Hb_000160_150 Hb_002708_020--Hb_000160_150 Hb_002708_020--Hb_008246_030 Hb_002708_020--Hb_027402_090 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_000265_220 Hb_000265_220 Hb_027402_090--Hb_000265_220 Hb_027402_090--Hb_149838_010 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_000169_190 Hb_000169_190 Hb_027402_090--Hb_000169_190 Hb_003216_120 Hb_003216_120 Hb_000024_070--Hb_003216_120 Hb_000363_380 Hb_000363_380 Hb_000024_070--Hb_000363_380 Hb_000024_070--Hb_002708_020 Hb_002612_010 Hb_002612_010 Hb_000024_070--Hb_002612_010 Hb_000024_070--Hb_008246_030 Hb_008246_030--Hb_000363_380 Hb_004920_060 Hb_004920_060 Hb_008246_030--Hb_004920_060 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_017895_020 Hb_017895_020 Hb_008246_030--Hb_017895_020 Hb_003638_010 Hb_003638_010 Hb_000170_060--Hb_003638_010 Hb_000170_060--Hb_000363_380 Hb_004079_120 Hb_004079_120 Hb_000170_060--Hb_004079_120 Hb_002092_100 Hb_002092_100 Hb_000170_060--Hb_002092_100 Hb_000024_120 Hb_000024_120 Hb_000170_060--Hb_000024_120 Hb_002997_160 Hb_002997_160 Hb_000170_060--Hb_002997_160 Hb_002783_020 Hb_002783_020 Hb_149838_010--Hb_002783_020 Hb_000260_140 Hb_000260_140 Hb_149838_010--Hb_000260_140 Hb_149838_010--Hb_002708_020 Hb_149838_010--Hb_000265_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19471 0.965073 1.61138 0.282001 2.18937 1.55917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123128 0.193648 0.176215 0.175955 0.586965

CAGE analysis