Hb_003216_120

Information

Type -
Description -
Location Contig3216: 130547-135929
Sequence    

Annotation

kegg
ID rcu:RCOM_0408340
description RNA binding protein, putative
nr
ID XP_012081451.1
description PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
swissprot
ID Q9SJ41
description Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1
trembl
ID A0A067K110
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18485 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 18-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34022: 130573-135703 , PASA_asmbl_34023: 130554-135678 , PASA_asmbl_34024: 130554-135678
cDNA
(Sanger)
(ID:Location)		 024_A15.ab1: 130573-132558 , 031_D12.ab1: 130573-132606 , 043_H03.ab1: 130573-132582

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_120 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
2 Hb_004899_030 0.1324166305 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
3 Hb_000024_070 0.132765242 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
4 Hb_000809_210 0.1390002591 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
5 Hb_028707_090 0.1492199896 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
6 Hb_000363_380 0.1497988217 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
7 Hb_008246_030 0.1511548651 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
8 Hb_002276_050 0.151163907 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
9 Hb_000770_030 0.1517780267 - - -
10 Hb_009767_090 0.1520328639 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001946_240 0.1523064525 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
12 Hb_005460_030 0.1524937212 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
13 Hb_000116_460 0.1531693931 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
14 Hb_007951_100 0.1531909247 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_000735_100 0.1531956195 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
16 Hb_000181_310 0.1538400975 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
17 Hb_033594_020 0.1545521977 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
18 Hb_000808_080 0.1556794575 - - PREDICTED: dnaJ homolog subfamily B member 3 [Jatropha curcas]
19 Hb_002612_010 0.1571388324 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
20 Hb_028872_120 0.1579065987 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]

Gene co-expression network

sample Hb_003216_120 Hb_003216_120 Hb_004899_030 Hb_004899_030 Hb_003216_120--Hb_004899_030 Hb_000024_070 Hb_000024_070 Hb_003216_120--Hb_000024_070 Hb_000809_210 Hb_000809_210 Hb_003216_120--Hb_000809_210 Hb_028707_090 Hb_028707_090 Hb_003216_120--Hb_028707_090 Hb_000363_380 Hb_000363_380 Hb_003216_120--Hb_000363_380 Hb_008246_030 Hb_008246_030 Hb_003216_120--Hb_008246_030 Hb_004899_030--Hb_028707_090 Hb_009851_110 Hb_009851_110 Hb_004899_030--Hb_009851_110 Hb_002301_270 Hb_002301_270 Hb_004899_030--Hb_002301_270 Hb_005895_040 Hb_005895_040 Hb_004899_030--Hb_005895_040 Hb_001396_290 Hb_001396_290 Hb_004899_030--Hb_001396_290 Hb_001473_080 Hb_001473_080 Hb_004899_030--Hb_001473_080 Hb_000024_070--Hb_000363_380 Hb_002708_020 Hb_002708_020 Hb_000024_070--Hb_002708_020 Hb_002612_010 Hb_002612_010 Hb_000024_070--Hb_002612_010 Hb_000024_070--Hb_008246_030 Hb_002686_330 Hb_002686_330 Hb_000024_070--Hb_002686_330 Hb_002681_170 Hb_002681_170 Hb_000809_210--Hb_002681_170 Hb_011915_010 Hb_011915_010 Hb_000809_210--Hb_011915_010 Hb_000031_290 Hb_000031_290 Hb_000809_210--Hb_000031_290 Hb_000265_220 Hb_000265_220 Hb_000809_210--Hb_000265_220 Hb_002093_030 Hb_002093_030 Hb_000809_210--Hb_002093_030 Hb_002092_100 Hb_002092_100 Hb_000809_210--Hb_002092_100 Hb_000104_080 Hb_000104_080 Hb_028707_090--Hb_000104_080 Hb_000640_020 Hb_000640_020 Hb_028707_090--Hb_000640_020 Hb_002477_130 Hb_002477_130 Hb_028707_090--Hb_002477_130 Hb_000640_220 Hb_000640_220 Hb_028707_090--Hb_000640_220 Hb_008518_050 Hb_008518_050 Hb_028707_090--Hb_008518_050 Hb_008143_030 Hb_008143_030 Hb_028707_090--Hb_008143_030 Hb_000363_380--Hb_008246_030 Hb_017895_020 Hb_017895_020 Hb_000363_380--Hb_017895_020 Hb_028872_120 Hb_028872_120 Hb_000363_380--Hb_028872_120 Hb_003029_130 Hb_003029_130 Hb_000363_380--Hb_003029_130 Hb_001178_150 Hb_001178_150 Hb_000363_380--Hb_001178_150 Hb_000487_220 Hb_000487_220 Hb_000363_380--Hb_000487_220 Hb_004920_060 Hb_004920_060 Hb_008246_030--Hb_004920_060 Hb_008246_030--Hb_002612_010 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_008246_030--Hb_017895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9465 15.1879 14.8188 4.07238 37.3776 25.794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8386 3.62761 3.96785 2.01111 14.6118

CAGE analysis