Hb_149838_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig149838: 1935-3132
Sequence    

Annotation

kegg
ID pxb:103965615
description myb-related protein 308-like
nr
ID XP_012081759.1
description PREDICTED: myb-related protein 308 [Jatropha curcas]
swissprot
ID P81393
description Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1
trembl
ID A0A067K095
description MYB family protein OS=Jatropha curcas GN=JCGZ_18803 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 308-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12482: 1974-3122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149838_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
2 Hb_002783_020 0.1050930832 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
3 Hb_000260_140 0.1166292392 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
4 Hb_027402_090 0.1256410495 - - endonuclease, putative [Ricinus communis]
5 Hb_002708_020 0.1337601434 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
6 Hb_000265_220 0.1482207801 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_002686_330 0.1520196492 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
8 Hb_005527_080 0.157793714 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
9 Hb_006816_330 0.1711265166 - - exonuclease, putative [Ricinus communis]
10 Hb_027380_030 0.1738218919 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
11 Hb_007456_010 0.1748391081 - - hypothetical protein L484_003540 [Morus notabilis]
12 Hb_000160_150 0.1768396872 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
13 Hb_002805_060 0.1838893828 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
14 Hb_002681_170 0.1843665602 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_006915_020 0.1844451573 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
16 Hb_002475_120 0.1852123275 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
17 Hb_000809_210 0.1897205396 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
18 Hb_000453_140 0.1907565682 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
19 Hb_004176_060 0.195771325 - - -
20 Hb_000165_140 0.1959592327 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_149838_010 Hb_149838_010 Hb_002783_020 Hb_002783_020 Hb_149838_010--Hb_002783_020 Hb_000260_140 Hb_000260_140 Hb_149838_010--Hb_000260_140 Hb_027402_090 Hb_027402_090 Hb_149838_010--Hb_027402_090 Hb_002708_020 Hb_002708_020 Hb_149838_010--Hb_002708_020 Hb_000265_220 Hb_000265_220 Hb_149838_010--Hb_000265_220 Hb_002686_330 Hb_002686_330 Hb_149838_010--Hb_002686_330 Hb_002783_020--Hb_000260_140 Hb_002783_020--Hb_027402_090 Hb_002783_020--Hb_002708_020 Hb_002783_020--Hb_002686_330 Hb_004176_060 Hb_004176_060 Hb_002783_020--Hb_004176_060 Hb_005527_080 Hb_005527_080 Hb_000260_140--Hb_005527_080 Hb_000260_140--Hb_002708_020 Hb_000260_140--Hb_004176_060 Hb_000160_150 Hb_000160_150 Hb_000260_140--Hb_000160_150 Hb_027402_090--Hb_000265_220 Hb_027402_090--Hb_002708_020 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_000169_190 Hb_000169_190 Hb_027402_090--Hb_000169_190 Hb_002708_020--Hb_000160_150 Hb_002708_020--Hb_002686_330 Hb_008246_030 Hb_008246_030 Hb_002708_020--Hb_008246_030 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_000265_220--Hb_000809_210 Hb_002896_060 Hb_002896_060 Hb_000265_220--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_000265_220--Hb_027380_030 Hb_011915_010 Hb_011915_010 Hb_000265_220--Hb_011915_010 Hb_000453_140 Hb_000453_140 Hb_000265_220--Hb_000453_140 Hb_002681_170 Hb_002681_170 Hb_000265_220--Hb_002681_170 Hb_002686_330--Hb_027402_090 Hb_000024_070 Hb_000024_070 Hb_002686_330--Hb_000024_070 Hb_002686_330--Hb_008246_030 Hb_000170_060 Hb_000170_060 Hb_002686_330--Hb_000170_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.677 26.3224 113.696 36.1458 140.814 76.8446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7211 7.0216 1.91326 11.8867 33.6006

CAGE analysis