Hb_004176_060

Information

Type -
Description -
Location Contig4176: 105387-106570
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004176_060 0.0 - - -
2 Hb_002783_020 0.1611763919 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
3 Hb_000260_140 0.1836563372 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
4 Hb_149838_010 0.195771325 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
5 Hb_027402_090 0.2053457992 - - endonuclease, putative [Ricinus communis]
6 Hb_008725_140 0.2108514295 - - PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
7 Hb_002596_030 0.2143862835 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
8 Hb_000538_260 0.2157202382 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
9 Hb_000318_240 0.221553311 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002686_330 0.2227170921 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
11 Hb_000436_100 0.2282907563 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
12 Hb_000160_150 0.2327008157 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
13 Hb_000424_020 0.2336101477 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
14 Hb_006816_330 0.236089577 - - exonuclease, putative [Ricinus communis]
15 Hb_006618_070 0.2366423807 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
16 Hb_000175_590 0.2382419426 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
17 Hb_001105_050 0.2391350414 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
18 Hb_000694_030 0.2397306314 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
19 Hb_002701_120 0.2401532359 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
20 Hb_002249_040 0.2433574458 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004176_060 Hb_004176_060 Hb_002783_020 Hb_002783_020 Hb_004176_060--Hb_002783_020 Hb_000260_140 Hb_000260_140 Hb_004176_060--Hb_000260_140 Hb_149838_010 Hb_149838_010 Hb_004176_060--Hb_149838_010 Hb_027402_090 Hb_027402_090 Hb_004176_060--Hb_027402_090 Hb_008725_140 Hb_008725_140 Hb_004176_060--Hb_008725_140 Hb_002596_030 Hb_002596_030 Hb_004176_060--Hb_002596_030 Hb_002783_020--Hb_149838_010 Hb_002783_020--Hb_000260_140 Hb_002783_020--Hb_027402_090 Hb_002708_020 Hb_002708_020 Hb_002783_020--Hb_002708_020 Hb_002686_330 Hb_002686_330 Hb_002783_020--Hb_002686_330 Hb_000260_140--Hb_149838_010 Hb_005527_080 Hb_005527_080 Hb_000260_140--Hb_005527_080 Hb_000260_140--Hb_002708_020 Hb_000160_150 Hb_000160_150 Hb_000260_140--Hb_000160_150 Hb_149838_010--Hb_027402_090 Hb_149838_010--Hb_002708_020 Hb_000265_220 Hb_000265_220 Hb_149838_010--Hb_000265_220 Hb_149838_010--Hb_002686_330 Hb_027402_090--Hb_000265_220 Hb_027402_090--Hb_002708_020 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_000169_190 Hb_000169_190 Hb_027402_090--Hb_000169_190 Hb_002249_040 Hb_002249_040 Hb_008725_140--Hb_002249_040 Hb_002265_010 Hb_002265_010 Hb_008725_140--Hb_002265_010 Hb_000424_070 Hb_000424_070 Hb_008725_140--Hb_000424_070 Hb_000538_260 Hb_000538_260 Hb_008725_140--Hb_000538_260 Hb_011609_010 Hb_011609_010 Hb_008725_140--Hb_011609_010 Hb_006618_070 Hb_006618_070 Hb_008725_140--Hb_006618_070 Hb_002701_120 Hb_002701_120 Hb_002596_030--Hb_002701_120 Hb_000390_310 Hb_000390_310 Hb_002596_030--Hb_000390_310 Hb_005276_130 Hb_005276_130 Hb_002596_030--Hb_005276_130 Hb_005527_010 Hb_005527_010 Hb_002596_030--Hb_005527_010 Hb_000175_590 Hb_000175_590 Hb_002596_030--Hb_000175_590 Hb_000694_030 Hb_000694_030 Hb_002596_030--Hb_000694_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15383 0.376813 2.67605 0.144223 1.28497 1.23941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20931 0.164415 0 0.070814 0.859328

CAGE analysis