Hb_000694_030

Information

Type -
Description -
Location Contig694: 60881-66019
Sequence    

Annotation

kegg
ID fve:101302852
description nucleobase-ascorbate transporter 1-like
nr
ID XP_012080636.1
description PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
swissprot
ID Q9SHZ3
description Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1
trembl
ID A0A067K720
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13746 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54528: 61019-63865 , PASA_asmbl_54529: 64024-65037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000694_030 0.0 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
2 Hb_005527_010 0.1168385371 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_066967_020 0.1227331327 - - RAB6-interacting protein, putative [Ricinus communis]
4 Hb_006618_070 0.1277103949 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
5 Hb_002701_120 0.1284386923 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
6 Hb_001959_240 0.1390251485 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_029142_030 0.1429628386 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
8 Hb_006555_040 0.148696678 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
9 Hb_004994_080 0.1508449419 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_030131_020 0.1520770516 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
11 Hb_000181_060 0.1521677524 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
12 Hb_001541_100 0.1533333768 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
13 Hb_000211_040 0.1535231614 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
14 Hb_004052_070 0.1536947307 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
15 Hb_011386_050 0.1560868411 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
16 Hb_000284_130 0.1576370831 - - sodium-bile acid cotransporter, putative [Ricinus communis]
17 Hb_000140_440 0.1595149473 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
18 Hb_000061_150 0.1597222019 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
19 Hb_015292_040 0.1600175568 - - PREDICTED: myb-like protein X [Jatropha curcas]
20 Hb_006326_050 0.1601578906 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000694_030 Hb_000694_030 Hb_005527_010 Hb_005527_010 Hb_000694_030--Hb_005527_010 Hb_066967_020 Hb_066967_020 Hb_000694_030--Hb_066967_020 Hb_006618_070 Hb_006618_070 Hb_000694_030--Hb_006618_070 Hb_002701_120 Hb_002701_120 Hb_000694_030--Hb_002701_120 Hb_001959_240 Hb_001959_240 Hb_000694_030--Hb_001959_240 Hb_029142_030 Hb_029142_030 Hb_000694_030--Hb_029142_030 Hb_000061_150 Hb_000061_150 Hb_005527_010--Hb_000061_150 Hb_011310_140 Hb_011310_140 Hb_005527_010--Hb_011310_140 Hb_005527_010--Hb_002701_120 Hb_005276_130 Hb_005276_130 Hb_005527_010--Hb_005276_130 Hb_005527_010--Hb_066967_020 Hb_021650_010 Hb_021650_010 Hb_066967_020--Hb_021650_010 Hb_006555_040 Hb_006555_040 Hb_066967_020--Hb_006555_040 Hb_001232_150 Hb_001232_150 Hb_066967_020--Hb_001232_150 Hb_066967_020--Hb_029142_030 Hb_000140_440 Hb_000140_440 Hb_066967_020--Hb_000140_440 Hb_002498_170 Hb_002498_170 Hb_006618_070--Hb_002498_170 Hb_006618_070--Hb_000140_440 Hb_002249_040 Hb_002249_040 Hb_006618_070--Hb_002249_040 Hb_000211_040 Hb_000211_040 Hb_006618_070--Hb_000211_040 Hb_006618_070--Hb_001959_240 Hb_006618_070--Hb_006555_040 Hb_002701_120--Hb_006618_070 Hb_002701_120--Hb_011310_140 Hb_000284_130 Hb_000284_130 Hb_002701_120--Hb_000284_130 Hb_005038_030 Hb_005038_030 Hb_002701_120--Hb_005038_030 Hb_015531_030 Hb_015531_030 Hb_001959_240--Hb_015531_030 Hb_006911_070 Hb_006911_070 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_001959_240--Hb_002498_170 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_011249_030 Hb_011249_030 Hb_029142_030--Hb_011249_030 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_002255_040 Hb_002255_040 Hb_029142_030--Hb_002255_040 Hb_000436_100 Hb_000436_100 Hb_029142_030--Hb_000436_100 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.07736 0.675017 12.9193 3.09887 3.99495 3.67168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11084 1.14055 0.794388 1.825 5.4368

CAGE analysis