Hb_005276_130

Information

Type -
Description -
Location Contig5276: 140587-153298
Sequence    

Annotation

kegg
ID rcu:RCOM_0558170
description hypothetical protein
nr
ID XP_002520749.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P40983
description Uncharacterized protein in xynA 3'region (Fragment) OS=Caldicellulosiruptor sp. (strain Rt8B.4) PE=4 SV=1
trembl
ID B9S430
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0558170 PE=4 SV=1
Gene Ontology
ID GO:0031969
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47092: 140914-146271 , PASA_asmbl_47094: 146705-146836 , PASA_asmbl_47095: 146839-147673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_158092_030 0.0805423549 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
3 Hb_000175_590 0.1139062445 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
4 Hb_003752_070 0.1169141465 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
5 Hb_001232_150 0.1227472153 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
6 Hb_021650_010 0.1262415464 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
7 Hb_005527_010 0.1268561305 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_005389_170 0.1270014301 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
9 Hb_000051_060 0.1277937238 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029695_110 0.1292928558 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
11 Hb_006570_010 0.1300734608 - - conserved hypothetical protein [Ricinus communis]
12 Hb_032202_180 0.1319020198 - - PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]
13 Hb_001205_300 0.1320110678 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
14 Hb_008206_060 0.135385499 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000436_100 0.1356550111 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
16 Hb_000920_030 0.1358007303 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_001195_270 0.1361753875 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
18 Hb_000640_160 0.1364319523 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
19 Hb_000948_170 0.1404121511 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
20 Hb_065525_130 0.1407179187 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005276_130 Hb_005276_130 Hb_158092_030 Hb_158092_030 Hb_005276_130--Hb_158092_030 Hb_000175_590 Hb_000175_590 Hb_005276_130--Hb_000175_590 Hb_003752_070 Hb_003752_070 Hb_005276_130--Hb_003752_070 Hb_001232_150 Hb_001232_150 Hb_005276_130--Hb_001232_150 Hb_021650_010 Hb_021650_010 Hb_005276_130--Hb_021650_010 Hb_005527_010 Hb_005527_010 Hb_005276_130--Hb_005527_010 Hb_000031_090 Hb_000031_090 Hb_158092_030--Hb_000031_090 Hb_029695_110 Hb_029695_110 Hb_158092_030--Hb_029695_110 Hb_158092_030--Hb_003752_070 Hb_000228_090 Hb_000228_090 Hb_158092_030--Hb_000228_090 Hb_000051_060 Hb_000051_060 Hb_158092_030--Hb_000051_060 Hb_004951_070 Hb_004951_070 Hb_000175_590--Hb_004951_070 Hb_000390_310 Hb_000390_310 Hb_000175_590--Hb_000390_310 Hb_065525_130 Hb_065525_130 Hb_000175_590--Hb_065525_130 Hb_001652_080 Hb_001652_080 Hb_000175_590--Hb_001652_080 Hb_032202_230 Hb_032202_230 Hb_000175_590--Hb_032202_230 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_003752_070--Hb_000051_060 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_001232_150--Hb_021650_010 Hb_000445_070 Hb_000445_070 Hb_001232_150--Hb_000445_070 Hb_001232_150--Hb_000051_060 Hb_000640_160 Hb_000640_160 Hb_001232_150--Hb_000640_160 Hb_003225_020 Hb_003225_020 Hb_001232_150--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_001232_150--Hb_005731_110 Hb_021650_010--Hb_005162_110 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_021650_010--Hb_001195_270 Hb_000061_150 Hb_000061_150 Hb_005527_010--Hb_000061_150 Hb_000694_030 Hb_000694_030 Hb_005527_010--Hb_000694_030 Hb_011310_140 Hb_011310_140 Hb_005527_010--Hb_011310_140 Hb_002701_120 Hb_002701_120 Hb_005527_010--Hb_002701_120 Hb_066967_020 Hb_066967_020 Hb_005527_010--Hb_066967_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.111 5.32681 23.6882 4.76532 16.1867 12.8565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.5032 7.0292 3.71271 3.24115 19.9617

CAGE analysis