Hb_000031_090

Information

Type -
Description -
Location Contig31: 79072-83785
Sequence    

Annotation

kegg
ID rcu:RCOM_0918650
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012076344.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Jatropha curcas]
swissprot
ID Q8VYD6
description Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana GN=CBSPPR1 PE=2 SV=1
trembl
ID A0A067KB46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07022 PE=4 SV=1
Gene Ontology
ID GO:0005829
description pentatricopeptide repeat-containing protein at5g10690

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32777: 79151-83590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Jatropha curcas]
2 Hb_158092_030 0.124473927 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
3 Hb_000723_100 0.1547953135 - - phosphoglycerate kinase, putative [Ricinus communis]
4 Hb_005433_010 0.1577401478 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
5 Hb_029695_110 0.1605728926 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
6 Hb_001097_100 0.1648127698 - - Chaperone DnaJ-domain superfamily protein [Theobroma cacao]
7 Hb_005276_130 0.1669648053 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003029_070 0.1751587605 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000228_090 0.1755317273 - - PREDICTED: protein PAM68, chloroplastic [Jatropha curcas]
10 Hb_003861_070 0.1756565762 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
11 Hb_006117_040 0.178974251 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
12 Hb_006132_070 0.1801784899 - - phosphate transporter [Manihot esculenta]
13 Hb_002338_020 0.181114983 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
14 Hb_004951_070 0.1851225003 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
15 Hb_000080_120 0.185279642 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
16 Hb_002893_070 0.1855069294 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
17 Hb_000920_030 0.1864135925 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_030928_040 0.1866355833 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_000061_020 0.1873179108 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
20 Hb_000300_670 0.1876077081 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000031_090 Hb_000031_090 Hb_158092_030 Hb_158092_030 Hb_000031_090--Hb_158092_030 Hb_000723_100 Hb_000723_100 Hb_000031_090--Hb_000723_100 Hb_005433_010 Hb_005433_010 Hb_000031_090--Hb_005433_010 Hb_029695_110 Hb_029695_110 Hb_000031_090--Hb_029695_110 Hb_001097_100 Hb_001097_100 Hb_000031_090--Hb_001097_100 Hb_005276_130 Hb_005276_130 Hb_000031_090--Hb_005276_130 Hb_158092_030--Hb_005276_130 Hb_158092_030--Hb_029695_110 Hb_003752_070 Hb_003752_070 Hb_158092_030--Hb_003752_070 Hb_000228_090 Hb_000228_090 Hb_158092_030--Hb_000228_090 Hb_000051_060 Hb_000051_060 Hb_158092_030--Hb_000051_060 Hb_003440_060 Hb_003440_060 Hb_000723_100--Hb_003440_060 Hb_002893_070 Hb_002893_070 Hb_000723_100--Hb_002893_070 Hb_004310_140 Hb_004310_140 Hb_000723_100--Hb_004310_140 Hb_000665_160 Hb_000665_160 Hb_000723_100--Hb_000665_160 Hb_000740_050 Hb_000740_050 Hb_000723_100--Hb_000740_050 Hb_000061_020 Hb_000061_020 Hb_000723_100--Hb_000061_020 Hb_006132_070 Hb_006132_070 Hb_005433_010--Hb_006132_070 Hb_000243_200 Hb_000243_200 Hb_005433_010--Hb_000243_200 Hb_003861_070 Hb_003861_070 Hb_005433_010--Hb_003861_070 Hb_004951_070 Hb_004951_070 Hb_005433_010--Hb_004951_070 Hb_000175_590 Hb_000175_590 Hb_005433_010--Hb_000175_590 Hb_000300_670 Hb_000300_670 Hb_005433_010--Hb_000300_670 Hb_000920_030 Hb_000920_030 Hb_029695_110--Hb_000920_030 Hb_001205_300 Hb_001205_300 Hb_029695_110--Hb_001205_300 Hb_000959_030 Hb_000959_030 Hb_029695_110--Hb_000959_030 Hb_003462_070 Hb_003462_070 Hb_029695_110--Hb_003462_070 Hb_002304_080 Hb_002304_080 Hb_029695_110--Hb_002304_080 Hb_029695_110--Hb_000723_100 Hb_114336_030 Hb_114336_030 Hb_001097_100--Hb_114336_030 Hb_001699_210 Hb_001699_210 Hb_001097_100--Hb_001699_210 Hb_001114_160 Hb_001114_160 Hb_001097_100--Hb_001114_160 Hb_032202_180 Hb_032202_180 Hb_001097_100--Hb_032202_180 Hb_001097_100--Hb_000228_090 Hb_012340_090 Hb_012340_090 Hb_001097_100--Hb_012340_090 Hb_005276_130--Hb_000175_590 Hb_005276_130--Hb_003752_070 Hb_001232_150 Hb_001232_150 Hb_005276_130--Hb_001232_150 Hb_021650_010 Hb_021650_010 Hb_005276_130--Hb_021650_010 Hb_005527_010 Hb_005527_010 Hb_005276_130--Hb_005527_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.73 4.31508 19.8768 6.33567 26.6644 7.42945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2142 14.5641 3.52427 3.41952 21.7127

CAGE analysis