Hb_006132_070

Information

Type -
Description -
Location Contig6132: 53739-59207
Sequence    

Annotation

kegg
ID rcu:RCOM_1615790
description Sialin, putative
nr
ID AJH76872.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q8GX78
description Ascorbate transporter, chloroplastic OS=Arabidopsis thaliana GN=PHT4;4 PE=1 SV=1
trembl
ID A0A0B5WYA8
description PT4;1 protein OS=Manihot esculenta GN=PT4;1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable anion transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51110: 56120-56389 , PASA_asmbl_51111: 58326-58984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006132_070 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_005433_010 0.1247919354 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
3 Hb_001085_050 0.1520522757 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
4 Hb_001401_080 0.1560151898 - - PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
5 Hb_029695_110 0.16430705 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
6 Hb_000243_200 0.1643201723 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000072_070 0.1658612464 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
8 Hb_000035_500 0.1673830621 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
9 Hb_001811_140 0.1680290032 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
10 Hb_002769_020 0.1690447195 - - DNA-damage-inducible protein f, putative [Ricinus communis]
11 Hb_000575_030 0.1702450465 - - unnamed protein product [Vitis vinifera]
12 Hb_000300_670 0.1714040476 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
13 Hb_000920_030 0.1722111574 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_001922_170 0.1724897791 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
15 Hb_004680_080 0.1730022587 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_003728_100 0.1759859431 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
17 Hb_000245_220 0.17918354 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
18 Hb_000031_090 0.1801784899 - - PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Jatropha curcas]
19 Hb_000700_150 0.1825696162 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004951_070 0.1851176052 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]

Gene co-expression network

sample Hb_006132_070 Hb_006132_070 Hb_005433_010 Hb_005433_010 Hb_006132_070--Hb_005433_010 Hb_001085_050 Hb_001085_050 Hb_006132_070--Hb_001085_050 Hb_001401_080 Hb_001401_080 Hb_006132_070--Hb_001401_080 Hb_029695_110 Hb_029695_110 Hb_006132_070--Hb_029695_110 Hb_000243_200 Hb_000243_200 Hb_006132_070--Hb_000243_200 Hb_000072_070 Hb_000072_070 Hb_006132_070--Hb_000072_070 Hb_005433_010--Hb_000243_200 Hb_003861_070 Hb_003861_070 Hb_005433_010--Hb_003861_070 Hb_004951_070 Hb_004951_070 Hb_005433_010--Hb_004951_070 Hb_000175_590 Hb_000175_590 Hb_005433_010--Hb_000175_590 Hb_000300_670 Hb_000300_670 Hb_005433_010--Hb_000300_670 Hb_008062_040 Hb_008062_040 Hb_001085_050--Hb_008062_040 Hb_001085_050--Hb_000072_070 Hb_000003_600 Hb_000003_600 Hb_001085_050--Hb_000003_600 Hb_007313_090 Hb_007313_090 Hb_001085_050--Hb_007313_090 Hb_000575_030 Hb_000575_030 Hb_001085_050--Hb_000575_030 Hb_003638_130 Hb_003638_130 Hb_001085_050--Hb_003638_130 Hb_003497_040 Hb_003497_040 Hb_001401_080--Hb_003497_040 Hb_005725_260 Hb_005725_260 Hb_001401_080--Hb_005725_260 Hb_000030_180 Hb_000030_180 Hb_001401_080--Hb_000030_180 Hb_001922_170 Hb_001922_170 Hb_001401_080--Hb_001922_170 Hb_004724_460 Hb_004724_460 Hb_001401_080--Hb_004724_460 Hb_000920_030 Hb_000920_030 Hb_029695_110--Hb_000920_030 Hb_001205_300 Hb_001205_300 Hb_029695_110--Hb_001205_300 Hb_000959_030 Hb_000959_030 Hb_029695_110--Hb_000959_030 Hb_003462_070 Hb_003462_070 Hb_029695_110--Hb_003462_070 Hb_002304_080 Hb_002304_080 Hb_029695_110--Hb_002304_080 Hb_000723_100 Hb_000723_100 Hb_029695_110--Hb_000723_100 Hb_032202_230 Hb_032202_230 Hb_000243_200--Hb_032202_230 Hb_000243_200--Hb_004951_070 Hb_000576_050 Hb_000576_050 Hb_000243_200--Hb_000576_050 Hb_000243_200--Hb_007313_090 Hb_001427_050 Hb_001427_050 Hb_000243_200--Hb_001427_050 Hb_000390_310 Hb_000390_310 Hb_000243_200--Hb_000390_310 Hb_011316_100 Hb_011316_100 Hb_000072_070--Hb_011316_100 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_000072_070--Hb_008062_040 Hb_000072_070--Hb_000575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.750293 0.0699388 0.414323 0.192933 0.259241 0.233499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.45079 0.307368 0.088955 0.122634 0.495317

CAGE analysis