Hb_008062_040

Information

Type -
Description -
Location Contig8062: 8892-14607
Sequence    

Annotation

kegg
ID rcu:RCOM_0885400
description carbonic anhydrase, putative (EC:4.2.1.1)
nr
ID XP_012069194.1
description PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
swissprot
ID Q94CE3
description Beta carbonic anhydrase 5, chloroplastic OS=Arabidopsis thaliana GN=BCA5 PE=2 SV=1
trembl
ID A0A067LA40
description Carbonic anhydrase OS=Jatropha curcas GN=JCGZ_24983 PE=3 SV=1
Gene Ontology
ID GO:0004089
description beta carbonic anhydrase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59049: 8883-14625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008062_040 0.0 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
2 Hb_001085_050 0.1010650097 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
3 Hb_000575_030 0.1098885572 - - unnamed protein product [Vitis vinifera]
4 Hb_000072_070 0.1318367537 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
5 Hb_000317_490 0.1582224007 - - Gibberellin receptor GID1, putative [Ricinus communis]
6 Hb_011316_100 0.1629706599 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
7 Hb_000331_250 0.1667031333 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
8 Hb_003607_050 0.1680754792 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
9 Hb_004228_080 0.1681059607 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
10 Hb_002374_570 0.1692462095 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
11 Hb_002284_150 0.1709766806 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
12 Hb_000189_310 0.1712154201 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
13 Hb_007479_050 0.1721306868 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
14 Hb_121937_010 0.1731990818 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
15 Hb_003001_110 0.1733403782 - - oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Jatropha curcas]
16 Hb_000805_120 0.173469079 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
17 Hb_002183_070 0.1736392253 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
18 Hb_000003_600 0.1741834891 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
19 Hb_001114_160 0.1748734675 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
20 Hb_012725_070 0.176915164 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008062_040 Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_008062_040--Hb_001085_050 Hb_000575_030 Hb_000575_030 Hb_008062_040--Hb_000575_030 Hb_000072_070 Hb_000072_070 Hb_008062_040--Hb_000072_070 Hb_000317_490 Hb_000317_490 Hb_008062_040--Hb_000317_490 Hb_011316_100 Hb_011316_100 Hb_008062_040--Hb_011316_100 Hb_000331_250 Hb_000331_250 Hb_008062_040--Hb_000331_250 Hb_001085_050--Hb_000072_070 Hb_000003_600 Hb_000003_600 Hb_001085_050--Hb_000003_600 Hb_007313_090 Hb_007313_090 Hb_001085_050--Hb_007313_090 Hb_001085_050--Hb_000575_030 Hb_003638_130 Hb_003638_130 Hb_001085_050--Hb_003638_130 Hb_003607_050 Hb_003607_050 Hb_000575_030--Hb_003607_050 Hb_000575_030--Hb_000072_070 Hb_000575_030--Hb_000317_490 Hb_004195_270 Hb_004195_270 Hb_000575_030--Hb_004195_270 Hb_000575_030--Hb_011316_100 Hb_000072_070--Hb_011316_100 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_000032_440 Hb_000032_440 Hb_000317_490--Hb_000032_440 Hb_002016_170 Hb_002016_170 Hb_000317_490--Hb_002016_170 Hb_002183_070 Hb_002183_070 Hb_000317_490--Hb_002183_070 Hb_000317_490--Hb_011316_100 Hb_000317_490--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_011316_100--Hb_035273_030 Hb_007479_050 Hb_007479_050 Hb_011316_100--Hb_007479_050 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040 Hb_004934_030 Hb_004934_030 Hb_000331_250--Hb_004934_030 Hb_001269_640 Hb_001269_640 Hb_000331_250--Hb_001269_640 Hb_005773_060 Hb_005773_060 Hb_000331_250--Hb_005773_060 Hb_000000_360 Hb_000000_360 Hb_000331_250--Hb_000000_360 Hb_003544_020 Hb_003544_020 Hb_000331_250--Hb_003544_020 Hb_121937_010 Hb_121937_010 Hb_000331_250--Hb_121937_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.698 5.65347 37.1973 12.7823 12.0753 13.9442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.549 19.1669 11.5006 3.77568 13.5079

CAGE analysis