Hb_001085_050

Information

Type -
Description -
Location Contig1085: 23255-29182
Sequence    

Annotation

kegg
ID rcu:RCOM_1018610
description hypothetical protein
nr
ID XP_012071117.1
description PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
swissprot
ID Q9NVG8
description TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3
trembl
ID A0A067KT89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01109 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02552: 23279-28220 , PASA_asmbl_02553: 23279-28220 , PASA_asmbl_02555: 23279-25181 , PASA_asmbl_02556: 25608-28220 , PASA_asmbl_02557: 26995-27253
cDNA
(Sanger)
(ID:Location)		 016_F20.ab1: 25743-28220 , 040_L20.ab1: 23279-25008

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_050 0.0 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
2 Hb_008062_040 0.1010650097 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
3 Hb_000072_070 0.1329911007 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
4 Hb_000003_600 0.1406595222 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
5 Hb_007313_090 0.147508051 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000575_030 0.1493487379 - - unnamed protein product [Vitis vinifera]
7 Hb_003638_130 0.1515588752 - - PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]
8 Hb_006132_070 0.1520522757 - - phosphate transporter [Manihot esculenta]
9 Hb_000181_090 0.1539840393 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
10 Hb_002299_030 0.1559582562 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002284_150 0.1571579576 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
12 Hb_012725_070 0.1596887775 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
13 Hb_001621_170 0.1661426305 - - protein binding protein, putative [Ricinus communis]
14 Hb_000189_310 0.1661821043 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
15 Hb_002022_060 0.1673507447 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
16 Hb_007885_060 0.1702164691 - - replication factor C 40 kDa family protein [Populus trichocarpa]
17 Hb_001956_040 0.1706252374 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001922_170 0.1721973742 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
19 Hb_000243_200 0.1729361411 - - conserved hypothetical protein [Ricinus communis]
20 Hb_032202_180 0.1734684132 - - PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001085_050 Hb_001085_050 Hb_008062_040 Hb_008062_040 Hb_001085_050--Hb_008062_040 Hb_000072_070 Hb_000072_070 Hb_001085_050--Hb_000072_070 Hb_000003_600 Hb_000003_600 Hb_001085_050--Hb_000003_600 Hb_007313_090 Hb_007313_090 Hb_001085_050--Hb_007313_090 Hb_000575_030 Hb_000575_030 Hb_001085_050--Hb_000575_030 Hb_003638_130 Hb_003638_130 Hb_001085_050--Hb_003638_130 Hb_008062_040--Hb_000575_030 Hb_008062_040--Hb_000072_070 Hb_000317_490 Hb_000317_490 Hb_008062_040--Hb_000317_490 Hb_011316_100 Hb_011316_100 Hb_008062_040--Hb_011316_100 Hb_000331_250 Hb_000331_250 Hb_008062_040--Hb_000331_250 Hb_000072_070--Hb_011316_100 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_000072_070--Hb_000575_030 Hb_002639_150 Hb_002639_150 Hb_000003_600--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000003_600--Hb_000926_310 Hb_003687_230 Hb_003687_230 Hb_000003_600--Hb_003687_230 Hb_005288_150 Hb_005288_150 Hb_000003_600--Hb_005288_150 Hb_000390_170 Hb_000390_170 Hb_000003_600--Hb_000390_170 Hb_002820_110 Hb_002820_110 Hb_000003_600--Hb_002820_110 Hb_000926_180 Hb_000926_180 Hb_007313_090--Hb_000926_180 Hb_000576_050 Hb_000576_050 Hb_007313_090--Hb_000576_050 Hb_000836_170 Hb_000836_170 Hb_007313_090--Hb_000836_170 Hb_004785_190 Hb_004785_190 Hb_007313_090--Hb_004785_190 Hb_058972_010 Hb_058972_010 Hb_007313_090--Hb_058972_010 Hb_027043_020 Hb_027043_020 Hb_007313_090--Hb_027043_020 Hb_003607_050 Hb_003607_050 Hb_000575_030--Hb_003607_050 Hb_000575_030--Hb_000317_490 Hb_004195_270 Hb_004195_270 Hb_000575_030--Hb_004195_270 Hb_000575_030--Hb_011316_100 Hb_000245_220 Hb_000245_220 Hb_003638_130--Hb_000245_220 Hb_000005_220 Hb_000005_220 Hb_003638_130--Hb_000005_220 Hb_000134_270 Hb_000134_270 Hb_003638_130--Hb_000134_270 Hb_162286_010 Hb_162286_010 Hb_003638_130--Hb_162286_010 Hb_002889_010 Hb_002889_010 Hb_003638_130--Hb_002889_010 Hb_142368_010 Hb_142368_010 Hb_003638_130--Hb_142368_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9931 6.36902 32.4972 8.54862 10.223 12.6475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4607 11.5578 6.74343 7.10833 12.8789

CAGE analysis