Hb_001401_080

Information

Type -
Description -
Location Contig1401: 72109-75602
Sequence    

Annotation

kegg
ID rcu:RCOM_1590720
description protein translocase, putative
nr
ID XP_012071667.1
description PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
swissprot
ID Q9SZB2
description Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1
trembl
ID A0A067KTQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04268 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10925: 73635-74048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_080 0.0 - - PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
2 Hb_006132_070 0.1560151898 - - phosphate transporter [Manihot esculenta]
3 Hb_003497_040 0.1783687293 - - ATP binding protein, putative [Ricinus communis]
4 Hb_005725_260 0.1934930764 - - squalene monooxygenase [Jatropha curcas]
5 Hb_000030_180 0.1955822437 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
6 Hb_001922_170 0.2025606765 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
7 Hb_004724_460 0.2059283431 - - hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
8 Hb_001056_030 0.2086077919 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
9 Hb_007192_070 0.2132632179 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
10 Hb_017987_030 0.2157679831 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
11 Hb_001811_140 0.2163061332 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
12 Hb_002496_020 0.2166877958 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000228_090 0.217582266 - - PREDICTED: protein PAM68, chloroplastic [Jatropha curcas]
14 Hb_000094_330 0.2184861896 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
15 Hb_000270_290 0.2208484212 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
16 Hb_011330_020 0.2214557858 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
17 Hb_000575_030 0.2216472316 - - unnamed protein product [Vitis vinifera]
18 Hb_001435_020 0.221699076 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
19 Hb_006570_140 0.2222117104 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
20 Hb_005847_060 0.2225806232 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]

Gene co-expression network

sample Hb_001401_080 Hb_001401_080 Hb_006132_070 Hb_006132_070 Hb_001401_080--Hb_006132_070 Hb_003497_040 Hb_003497_040 Hb_001401_080--Hb_003497_040 Hb_005725_260 Hb_005725_260 Hb_001401_080--Hb_005725_260 Hb_000030_180 Hb_000030_180 Hb_001401_080--Hb_000030_180 Hb_001922_170 Hb_001922_170 Hb_001401_080--Hb_001922_170 Hb_004724_460 Hb_004724_460 Hb_001401_080--Hb_004724_460 Hb_005433_010 Hb_005433_010 Hb_006132_070--Hb_005433_010 Hb_001085_050 Hb_001085_050 Hb_006132_070--Hb_001085_050 Hb_029695_110 Hb_029695_110 Hb_006132_070--Hb_029695_110 Hb_000243_200 Hb_000243_200 Hb_006132_070--Hb_000243_200 Hb_000072_070 Hb_000072_070 Hb_006132_070--Hb_000072_070 Hb_028697_010 Hb_028697_010 Hb_003497_040--Hb_028697_010 Hb_032208_070 Hb_032208_070 Hb_003497_040--Hb_032208_070 Hb_001454_260 Hb_001454_260 Hb_003497_040--Hb_001454_260 Hb_148025_010 Hb_148025_010 Hb_003497_040--Hb_148025_010 Hb_000997_250 Hb_000997_250 Hb_003497_040--Hb_000997_250 Hb_011360_070 Hb_011360_070 Hb_003497_040--Hb_011360_070 Hb_000441_060 Hb_000441_060 Hb_005725_260--Hb_000441_060 Hb_000172_380 Hb_000172_380 Hb_005725_260--Hb_000172_380 Hb_000796_170 Hb_000796_170 Hb_005725_260--Hb_000796_170 Hb_000028_110 Hb_000028_110 Hb_005725_260--Hb_000028_110 Hb_001435_020 Hb_001435_020 Hb_005725_260--Hb_001435_020 Hb_001234_080 Hb_001234_080 Hb_000030_180--Hb_001234_080 Hb_009694_010 Hb_009694_010 Hb_000030_180--Hb_009694_010 Hb_004837_030 Hb_004837_030 Hb_000030_180--Hb_004837_030 Hb_004096_090 Hb_004096_090 Hb_000030_180--Hb_004096_090 Hb_028227_020 Hb_028227_020 Hb_000030_180--Hb_028227_020 Hb_002112_020 Hb_002112_020 Hb_000030_180--Hb_002112_020 Hb_054865_120 Hb_054865_120 Hb_001922_170--Hb_054865_120 Hb_006570_140 Hb_006570_140 Hb_001922_170--Hb_006570_140 Hb_005847_060 Hb_005847_060 Hb_001922_170--Hb_005847_060 Hb_001579_270 Hb_001579_270 Hb_001922_170--Hb_001579_270 Hb_002820_050 Hb_002820_050 Hb_001922_170--Hb_002820_050 Hb_000094_330 Hb_000094_330 Hb_001922_170--Hb_000094_330 Hb_004218_280 Hb_004218_280 Hb_004724_460--Hb_004218_280 Hb_003462_070 Hb_003462_070 Hb_004724_460--Hb_003462_070 Hb_000203_230 Hb_000203_230 Hb_004724_460--Hb_000203_230 Hb_000084_200 Hb_000084_200 Hb_004724_460--Hb_000084_200 Hb_000920_030 Hb_000920_030 Hb_004724_460--Hb_000920_030 Hb_000061_020 Hb_000061_020 Hb_004724_460--Hb_000061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8129 0.0845849 0.777089 0.983548 0.461065 0.945083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52062 1.53716 0.102466 0.369405 1.70489

CAGE analysis