Hb_005725_260

Information

Type -
Description -
Location Contig5725: 164646-169182
Sequence    

Annotation

kegg
ID rcu:RCOM_1585750
description Squalene monooxygenase, putative (EC:1.14.99.7)
nr
ID NP_001295656.1
description squalene monooxygenase [Jatropha curcas]
swissprot
ID O48651
description Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
trembl
ID U3PWV8
description Squalene epoxidase OS=Jatropha curcas GN=SQE PE=2 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49430: 164671-169199 , PASA_asmbl_49431: 168485-168733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_260 0.0 - - squalene monooxygenase [Jatropha curcas]
2 Hb_001401_080 0.1934930764 - - PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
3 Hb_000441_060 0.1996060438 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
4 Hb_000172_380 0.2000716136 - - small heat-shock protein, putative [Ricinus communis]
5 Hb_000796_170 0.2059615761 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
6 Hb_000028_110 0.2088468867 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
7 Hb_001435_020 0.2088921813 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
8 Hb_012506_070 0.2090080748 - - hypothetical protein POPTR_0004s20060g [Populus trichocarpa]
9 Hb_000920_030 0.2093595917 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_004724_460 0.2118623777 - - hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
11 Hb_000059_270 0.2120529743 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
12 Hb_093458_060 0.2122328738 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
13 Hb_001405_140 0.2142808613 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
14 Hb_001080_070 0.2160635558 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
15 Hb_006538_120 0.2181390364 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
16 Hb_000627_260 0.2208436881 - - chloride channel clc, putative [Ricinus communis]
17 Hb_000648_040 0.2216044127 - - unknown [Populus trichocarpa]
18 Hb_000107_570 0.2226475159 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
19 Hb_003666_040 0.2231982547 - - PREDICTED: uncharacterized protein LOC105639624 [Jatropha curcas]
20 Hb_006132_070 0.2242176788 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_005725_260 Hb_005725_260 Hb_001401_080 Hb_001401_080 Hb_005725_260--Hb_001401_080 Hb_000441_060 Hb_000441_060 Hb_005725_260--Hb_000441_060 Hb_000172_380 Hb_000172_380 Hb_005725_260--Hb_000172_380 Hb_000796_170 Hb_000796_170 Hb_005725_260--Hb_000796_170 Hb_000028_110 Hb_000028_110 Hb_005725_260--Hb_000028_110 Hb_001435_020 Hb_001435_020 Hb_005725_260--Hb_001435_020 Hb_006132_070 Hb_006132_070 Hb_001401_080--Hb_006132_070 Hb_003497_040 Hb_003497_040 Hb_001401_080--Hb_003497_040 Hb_000030_180 Hb_000030_180 Hb_001401_080--Hb_000030_180 Hb_001922_170 Hb_001922_170 Hb_001401_080--Hb_001922_170 Hb_004724_460 Hb_004724_460 Hb_001401_080--Hb_004724_460 Hb_000608_380 Hb_000608_380 Hb_000441_060--Hb_000608_380 Hb_000920_030 Hb_000920_030 Hb_000441_060--Hb_000920_030 Hb_069662_010 Hb_069662_010 Hb_000441_060--Hb_069662_010 Hb_003752_070 Hb_003752_070 Hb_000441_060--Hb_003752_070 Hb_006538_120 Hb_006538_120 Hb_000441_060--Hb_006538_120 Hb_000029_110 Hb_000029_110 Hb_000441_060--Hb_000029_110 Hb_000059_270 Hb_000059_270 Hb_000172_380--Hb_000059_270 Hb_004735_020 Hb_004735_020 Hb_000172_380--Hb_004735_020 Hb_001080_070 Hb_001080_070 Hb_000172_380--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000172_380--Hb_000114_150 Hb_001220_050 Hb_001220_050 Hb_000172_380--Hb_001220_050 Hb_009020_040 Hb_009020_040 Hb_000172_380--Hb_009020_040 Hb_005000_130 Hb_005000_130 Hb_000796_170--Hb_005000_130 Hb_000371_100 Hb_000371_100 Hb_000796_170--Hb_000371_100 Hb_000796_170--Hb_000172_380 Hb_000796_170--Hb_001435_020 Hb_007722_010 Hb_007722_010 Hb_000796_170--Hb_007722_010 Hb_000135_030 Hb_000135_030 Hb_000796_170--Hb_000135_030 Hb_000107_570 Hb_000107_570 Hb_000028_110--Hb_000107_570 Hb_158845_050 Hb_158845_050 Hb_000028_110--Hb_158845_050 Hb_002304_080 Hb_002304_080 Hb_000028_110--Hb_002304_080 Hb_000164_140 Hb_000164_140 Hb_000028_110--Hb_000164_140 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060 Hb_000622_240 Hb_000622_240 Hb_001435_020--Hb_000622_240 Hb_003349_030 Hb_003349_030 Hb_001435_020--Hb_003349_030 Hb_001712_020 Hb_001712_020 Hb_001435_020--Hb_001712_020 Hb_001790_030 Hb_001790_030 Hb_001435_020--Hb_001790_030 Hb_005846_030 Hb_005846_030 Hb_001435_020--Hb_005846_030 Hb_000390_110 Hb_000390_110 Hb_001435_020--Hb_000390_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8362 6.65593 23.3741 28.9359 21.9833 10.94
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5315 27.6079 0.139214 9.04243 75.2408

CAGE analysis