Hb_005000_130

Information

Type -
Description -
Location Contig5000: 112747-125890
Sequence    

Annotation

kegg
ID rcu:RCOM_1046790
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_012076927.1
description PREDICTED: beta-galactosidase-like [Jatropha curcas]
swissprot
ID P48980
description Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1
trembl
ID A0A067KPU1
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_07400 PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45801: 118116-118728 , PASA_asmbl_45802: 125357-125917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_130 0.0 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
2 Hb_000796_170 0.1443868028 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
3 Hb_000300_660 0.1770589319 - - unknown [Glycine max]
4 Hb_000983_040 0.1808031987 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
5 Hb_000371_100 0.1834156966 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
6 Hb_054132_010 0.1963292212 - - PREDICTED: transmembrane protein 136-like isoform X2 [Pyrus x bretschneideri]
7 Hb_001435_020 0.2031413707 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
8 Hb_007722_010 0.2051754687 - - PREDICTED: kinesin light chain [Jatropha curcas]
9 Hb_002496_020 0.2065040454 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000028_110 0.210665979 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
11 Hb_006442_020 0.2141063494 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
12 Hb_000333_080 0.2154941091 - - PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
13 Hb_005672_020 0.2164672962 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
14 Hb_011021_020 0.2184125708 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
15 Hb_000327_110 0.2190560965 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
16 Hb_004191_020 0.2214992557 - - PREDICTED: cysteine synthase [Jatropha curcas]
17 Hb_000609_100 0.2250194039 - - Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_010883_040 0.2252382089 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
19 Hb_004223_190 0.226288634 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
20 Hb_000622_240 0.2263109623 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005000_130 Hb_005000_130 Hb_000796_170 Hb_000796_170 Hb_005000_130--Hb_000796_170 Hb_000300_660 Hb_000300_660 Hb_005000_130--Hb_000300_660 Hb_000983_040 Hb_000983_040 Hb_005000_130--Hb_000983_040 Hb_000371_100 Hb_000371_100 Hb_005000_130--Hb_000371_100 Hb_054132_010 Hb_054132_010 Hb_005000_130--Hb_054132_010 Hb_001435_020 Hb_001435_020 Hb_005000_130--Hb_001435_020 Hb_000796_170--Hb_000371_100 Hb_000172_380 Hb_000172_380 Hb_000796_170--Hb_000172_380 Hb_000796_170--Hb_001435_020 Hb_007722_010 Hb_007722_010 Hb_000796_170--Hb_007722_010 Hb_000135_030 Hb_000135_030 Hb_000796_170--Hb_000135_030 Hb_000028_110 Hb_000028_110 Hb_000300_660--Hb_000028_110 Hb_009767_130 Hb_009767_130 Hb_000300_660--Hb_009767_130 Hb_000300_660--Hb_000371_100 Hb_015934_120 Hb_015934_120 Hb_000300_660--Hb_015934_120 Hb_000327_110 Hb_000327_110 Hb_000300_660--Hb_000327_110 Hb_003994_110 Hb_003994_110 Hb_000300_660--Hb_003994_110 Hb_000983_040--Hb_054132_010 Hb_006442_020 Hb_006442_020 Hb_000983_040--Hb_006442_020 Hb_004191_020 Hb_004191_020 Hb_000983_040--Hb_004191_020 Hb_005144_050 Hb_005144_050 Hb_000983_040--Hb_005144_050 Hb_000337_050 Hb_000337_050 Hb_000983_040--Hb_000337_050 Hb_000617_200 Hb_000617_200 Hb_000983_040--Hb_000617_200 Hb_005672_020 Hb_005672_020 Hb_000371_100--Hb_005672_020 Hb_001504_030 Hb_001504_030 Hb_000371_100--Hb_001504_030 Hb_001828_040 Hb_001828_040 Hb_000371_100--Hb_001828_040 Hb_000371_100--Hb_000028_110 Hb_002496_020 Hb_002496_020 Hb_000371_100--Hb_002496_020 Hb_001314_080 Hb_001314_080 Hb_000371_100--Hb_001314_080 Hb_054132_010--Hb_006442_020 Hb_054132_010--Hb_004191_020 Hb_079483_020 Hb_079483_020 Hb_054132_010--Hb_079483_020 Hb_004619_080 Hb_004619_080 Hb_054132_010--Hb_004619_080 Hb_002221_070 Hb_002221_070 Hb_054132_010--Hb_002221_070 Hb_000622_240 Hb_000622_240 Hb_001435_020--Hb_000622_240 Hb_003349_030 Hb_003349_030 Hb_001435_020--Hb_003349_030 Hb_001712_020 Hb_001712_020 Hb_001435_020--Hb_001712_020 Hb_001790_030 Hb_001790_030 Hb_001435_020--Hb_001790_030 Hb_005846_030 Hb_005846_030 Hb_001435_020--Hb_005846_030 Hb_000390_110 Hb_000390_110 Hb_001435_020--Hb_000390_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76443 0.0662979 0.88762 3.72798 1.47654 2.71154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.94984 1.58596 1.4922 0.189709 6.01017

CAGE analysis