Hb_000135_030

Information

Type -
Description -
Location Contig135: 40843-44596
Sequence    

Annotation

kegg
ID rcu:RCOM_0091860
description hypothetical protein
nr
ID XP_012073022.1
description PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06812 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09851: 40882-46552 , PASA_asmbl_09852: 40881-46552 , PASA_asmbl_09853: 41489-46552 , PASA_asmbl_09854: 41489-46552 , PASA_asmbl_09856: 43256-44601 , PASA_asmbl_09857: 43256-44601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000135_030 0.0 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
2 Hb_114310_110 0.1114029545 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_004398_030 0.1116006983 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
4 Hb_011486_040 0.1152722255 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
5 Hb_007811_030 0.1200817764 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002496_020 0.1206849361 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000984_270 0.1207912238 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010883_040 0.1232604721 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
9 Hb_001584_200 0.1244730355 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
10 Hb_000920_030 0.1266844854 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_007803_030 0.1270057968 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
12 Hb_004223_190 0.1294507397 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
13 Hb_075751_010 0.1301948449 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
14 Hb_002374_240 0.1309787374 - - nucellin, putative [Ricinus communis]
15 Hb_002217_260 0.1315810979 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
16 Hb_005672_020 0.1318155468 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
17 Hb_000613_010 0.1339932151 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
18 Hb_001314_080 0.1345940203 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
19 Hb_000627_250 0.1351157642 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
20 Hb_000556_090 0.135640347 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000135_030 Hb_000135_030 Hb_114310_110 Hb_114310_110 Hb_000135_030--Hb_114310_110 Hb_004398_030 Hb_004398_030 Hb_000135_030--Hb_004398_030 Hb_011486_040 Hb_011486_040 Hb_000135_030--Hb_011486_040 Hb_007811_030 Hb_007811_030 Hb_000135_030--Hb_007811_030 Hb_002496_020 Hb_002496_020 Hb_000135_030--Hb_002496_020 Hb_000984_270 Hb_000984_270 Hb_000135_030--Hb_000984_270 Hb_000608_170 Hb_000608_170 Hb_114310_110--Hb_000608_170 Hb_114310_110--Hb_004398_030 Hb_000928_010 Hb_000928_010 Hb_114310_110--Hb_000928_010 Hb_000371_100 Hb_000371_100 Hb_114310_110--Hb_000371_100 Hb_185447_010 Hb_185447_010 Hb_114310_110--Hb_185447_010 Hb_001975_090 Hb_001975_090 Hb_004398_030--Hb_001975_090 Hb_007803_030 Hb_007803_030 Hb_004398_030--Hb_007803_030 Hb_006816_180 Hb_006816_180 Hb_004398_030--Hb_006816_180 Hb_000181_240 Hb_000181_240 Hb_004398_030--Hb_000181_240 Hb_000627_250 Hb_000627_250 Hb_004398_030--Hb_000627_250 Hb_004531_140 Hb_004531_140 Hb_011486_040--Hb_004531_140 Hb_152202_010 Hb_152202_010 Hb_011486_040--Hb_152202_010 Hb_001898_210 Hb_001898_210 Hb_011486_040--Hb_001898_210 Hb_001640_030 Hb_001640_030 Hb_011486_040--Hb_001640_030 Hb_011486_040--Hb_002496_020 Hb_000370_020 Hb_000370_020 Hb_011486_040--Hb_000370_020 Hb_000915_260 Hb_000915_260 Hb_007811_030--Hb_000915_260 Hb_001971_010 Hb_001971_010 Hb_007811_030--Hb_001971_010 Hb_008096_010 Hb_008096_010 Hb_007811_030--Hb_008096_010 Hb_000054_090 Hb_000054_090 Hb_007811_030--Hb_000054_090 Hb_000173_290 Hb_000173_290 Hb_007811_030--Hb_000173_290 Hb_001348_180 Hb_001348_180 Hb_007811_030--Hb_001348_180 Hb_004191_020 Hb_004191_020 Hb_002496_020--Hb_004191_020 Hb_000479_250 Hb_000479_250 Hb_002496_020--Hb_000479_250 Hb_002496_020--Hb_004531_140 Hb_001369_750 Hb_001369_750 Hb_002496_020--Hb_001369_750 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_001584_200 Hb_001584_200 Hb_002496_020--Hb_001584_200 Hb_001604_120 Hb_001604_120 Hb_000984_270--Hb_001604_120 Hb_006846_070 Hb_006846_070 Hb_000984_270--Hb_006846_070 Hb_000613_010 Hb_000613_010 Hb_000984_270--Hb_000613_010 Hb_000108_050 Hb_000108_050 Hb_000984_270--Hb_000108_050 Hb_005672_020 Hb_005672_020 Hb_000984_270--Hb_005672_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.2237 10.2367 31.0249 34.7114 34.7212 26.1382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6188 18.2986 32.4867 11.9698 65.8753

CAGE analysis