Hb_007803_030

Information

Type -
Description -
Location Contig7803: 24375-30363
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12440g
description POPTRDRAFT_232027; hypothetical protein
nr
ID XP_012070627.1
description PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
swissprot
ID Q2KIY1
description Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3
trembl
ID A0A067L495
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00681 PE=4 SV=1
Gene Ontology
ID GO:0016021
description peroxisomal membrane 22 kda family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57941: 28937-29393 , PASA_asmbl_57942: 24377-30158
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007803_030 0.0 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
2 Hb_004398_030 0.1007660779 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
3 Hb_000300_670 0.101992925 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
4 Hb_001014_100 0.1115530779 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
5 Hb_025557_050 0.1126715502 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
6 Hb_006816_180 0.1130355968 - - -
7 Hb_000640_160 0.1143986803 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_000340_420 0.1165696908 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
9 Hb_001619_050 0.117067829 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
10 Hb_001975_090 0.117182801 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
11 Hb_000920_030 0.1189066692 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_000445_140 0.1189552503 - - hypothetical protein RCOM_0561550 [Ricinus communis]
13 Hb_002876_220 0.119358757 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
14 Hb_003029_070 0.1206241005 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_021409_180 0.1210719498 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
16 Hb_003462_070 0.1235662655 - - arsenical pump-driving atpase, putative [Ricinus communis]
17 Hb_005496_050 0.1236401803 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
18 Hb_003531_080 0.1253541573 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
19 Hb_017151_010 0.125884575 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
20 Hb_000135_030 0.1270057968 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007803_030 Hb_007803_030 Hb_004398_030 Hb_004398_030 Hb_007803_030--Hb_004398_030 Hb_000300_670 Hb_000300_670 Hb_007803_030--Hb_000300_670 Hb_001014_100 Hb_001014_100 Hb_007803_030--Hb_001014_100 Hb_025557_050 Hb_025557_050 Hb_007803_030--Hb_025557_050 Hb_006816_180 Hb_006816_180 Hb_007803_030--Hb_006816_180 Hb_000640_160 Hb_000640_160 Hb_007803_030--Hb_000640_160 Hb_001975_090 Hb_001975_090 Hb_004398_030--Hb_001975_090 Hb_004398_030--Hb_006816_180 Hb_000135_030 Hb_000135_030 Hb_004398_030--Hb_000135_030 Hb_000181_240 Hb_000181_240 Hb_004398_030--Hb_000181_240 Hb_000627_250 Hb_000627_250 Hb_004398_030--Hb_000627_250 Hb_000300_670--Hb_025557_050 Hb_000300_670--Hb_000640_160 Hb_003029_070 Hb_003029_070 Hb_000300_670--Hb_003029_070 Hb_004970_190 Hb_004970_190 Hb_000300_670--Hb_004970_190 Hb_000300_670--Hb_006816_180 Hb_000445_140 Hb_000445_140 Hb_001014_100--Hb_000445_140 Hb_005496_050 Hb_005496_050 Hb_001014_100--Hb_005496_050 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_001619_050 Hb_001619_050 Hb_001014_100--Hb_001619_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_002811_270 Hb_002811_270 Hb_001014_100--Hb_002811_270 Hb_017151_010 Hb_017151_010 Hb_025557_050--Hb_017151_010 Hb_001789_190 Hb_001789_190 Hb_025557_050--Hb_001789_190 Hb_010812_050 Hb_010812_050 Hb_025557_050--Hb_010812_050 Hb_008059_010 Hb_008059_010 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010 Hb_006816_180--Hb_005496_050 Hb_000062_260 Hb_000062_260 Hb_006816_180--Hb_000062_260 Hb_000358_140 Hb_000358_140 Hb_006816_180--Hb_000358_140 Hb_002027_090 Hb_002027_090 Hb_006816_180--Hb_002027_090 Hb_006816_180--Hb_025557_050 Hb_003225_020 Hb_003225_020 Hb_000640_160--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_000640_160--Hb_005731_110 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.7503 34.0561 75.0746 38.9049 41.1957 37.612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.6676 21.2001 40.7476 14.0778 76.444

CAGE analysis