Hb_114310_110

Information

Type -
Description -
Location Contig114310: 58138-61458
Sequence    

Annotation

kegg
ID rcu:RCOM_1595080
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002510418.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID Q9FJZ3
description Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1
trembl
ID B9R7X5
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_1595080 PE=3 SV=1
Gene Ontology
ID GO:0004553
description mannan endo- -beta-mannosidase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04376: 58142-60837 , PASA_asmbl_04377: 59320-59597
cDNA
(Sanger)
(ID:Location)		 009_B18.ab1: 58479-59927

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114310_110 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_000135_030 0.1114029545 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
3 Hb_000608_170 0.1223363859 - - F23N19.4 [Arabidopsis thaliana]
4 Hb_004398_030 0.1358018203 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
5 Hb_000928_010 0.137863665 - - Cell division protein ftsZ, putative [Ricinus communis]
6 Hb_000371_100 0.1391071815 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
7 Hb_185447_010 0.1445431219 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
8 Hb_005672_020 0.1460878267 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
9 Hb_002217_260 0.1467713137 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
10 Hb_000603_230 0.1493846425 - - copper-transporting atpase paa1, putative [Ricinus communis]
11 Hb_000984_270 0.1499575435 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000331_490 0.1530439648 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
13 Hb_010883_040 0.1534806553 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
14 Hb_002284_310 0.1549090018 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
15 Hb_001584_200 0.157275777 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
16 Hb_075751_010 0.1577594816 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
17 Hb_000103_530 0.1583810548 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
18 Hb_000462_090 0.1587892085 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
19 Hb_000368_090 0.1603812526 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
20 Hb_000540_050 0.1653571222 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_114310_110 Hb_114310_110 Hb_000135_030 Hb_000135_030 Hb_114310_110--Hb_000135_030 Hb_000608_170 Hb_000608_170 Hb_114310_110--Hb_000608_170 Hb_004398_030 Hb_004398_030 Hb_114310_110--Hb_004398_030 Hb_000928_010 Hb_000928_010 Hb_114310_110--Hb_000928_010 Hb_000371_100 Hb_000371_100 Hb_114310_110--Hb_000371_100 Hb_185447_010 Hb_185447_010 Hb_114310_110--Hb_185447_010 Hb_000135_030--Hb_004398_030 Hb_011486_040 Hb_011486_040 Hb_000135_030--Hb_011486_040 Hb_007811_030 Hb_007811_030 Hb_000135_030--Hb_007811_030 Hb_002496_020 Hb_002496_020 Hb_000135_030--Hb_002496_020 Hb_000984_270 Hb_000984_270 Hb_000135_030--Hb_000984_270 Hb_000608_170--Hb_000928_010 Hb_000462_090 Hb_000462_090 Hb_000608_170--Hb_000462_090 Hb_005282_020 Hb_005282_020 Hb_000608_170--Hb_005282_020 Hb_002685_060 Hb_002685_060 Hb_000608_170--Hb_002685_060 Hb_000340_150 Hb_000340_150 Hb_000608_170--Hb_000340_150 Hb_001975_090 Hb_001975_090 Hb_004398_030--Hb_001975_090 Hb_007803_030 Hb_007803_030 Hb_004398_030--Hb_007803_030 Hb_006816_180 Hb_006816_180 Hb_004398_030--Hb_006816_180 Hb_000181_240 Hb_000181_240 Hb_004398_030--Hb_000181_240 Hb_000627_250 Hb_000627_250 Hb_004398_030--Hb_000627_250 Hb_000928_010--Hb_000462_090 Hb_000928_010--Hb_000340_150 Hb_000928_010--Hb_005282_020 Hb_000928_010--Hb_002685_060 Hb_001584_200 Hb_001584_200 Hb_000928_010--Hb_001584_200 Hb_005672_020 Hb_005672_020 Hb_000371_100--Hb_005672_020 Hb_001504_030 Hb_001504_030 Hb_000371_100--Hb_001504_030 Hb_001828_040 Hb_001828_040 Hb_000371_100--Hb_001828_040 Hb_000028_110 Hb_000028_110 Hb_000371_100--Hb_000028_110 Hb_000371_100--Hb_002496_020 Hb_001314_080 Hb_001314_080 Hb_000371_100--Hb_001314_080 Hb_000208_120 Hb_000208_120 Hb_185447_010--Hb_000208_120 Hb_003976_020 Hb_003976_020 Hb_185447_010--Hb_003976_020 Hb_018133_090 Hb_018133_090 Hb_185447_010--Hb_018133_090 Hb_001439_060 Hb_001439_060 Hb_185447_010--Hb_001439_060 Hb_185447_010--Hb_000608_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
321.78 65.3428 264.399 221.232 157.213 144.88
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
216.312 144.383 369.076 56.9903 615.105

CAGE analysis