Hb_003976_020

Information

Type -
Description -
Location Contig3976: 17072-17572
Sequence    

Annotation

kegg
ID rcu:RCOM_0364170
description Regulator of ribonuclease activity A, putative
nr
ID XP_002529206.1
description Regulator of ribonuclease activity A, putative [Ricinus communis]
swissprot
ID Q9FH13
description Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 OS=Arabidopsis thaliana GN=At5g56260 PE=1 SV=1
trembl
ID B9ST87
description 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Ricinus communis GN=RCOM_0364170 PE=3 SV=1
Gene Ontology
ID GO:0008168
description 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39637: 16831-19457 , PASA_asmbl_39638: 16831-19358
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003976_020 0.0 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
2 Hb_018133_090 0.1176642868 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000462_090 0.1247581564 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
4 Hb_001824_090 0.1288224322 - - -
5 Hb_000608_170 0.1323759107 - - F23N19.4 [Arabidopsis thaliana]
6 Hb_185447_010 0.1344981355 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
7 Hb_001584_200 0.1348657893 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
8 Hb_000337_050 0.135677979 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
9 Hb_001049_110 0.1371690306 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_001439_060 0.1387921027 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
11 Hb_000172_580 0.1388904458 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000928_010 0.1440071432 - - Cell division protein ftsZ, putative [Ricinus communis]
13 Hb_003086_080 0.1481595414 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
14 Hb_012760_190 0.1485593515 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
15 Hb_003994_110 0.1487079192 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
16 Hb_003376_230 0.1496811567 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
17 Hb_000295_080 0.150816023 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
18 Hb_001863_500 0.1530591677 - - Protein brittle-1, chloroplast precursor, putative [Ricinus communis]
19 Hb_006275_070 0.1589946193 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
20 Hb_000556_090 0.1604246779 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003976_020 Hb_003976_020 Hb_018133_090 Hb_018133_090 Hb_003976_020--Hb_018133_090 Hb_000462_090 Hb_000462_090 Hb_003976_020--Hb_000462_090 Hb_001824_090 Hb_001824_090 Hb_003976_020--Hb_001824_090 Hb_000608_170 Hb_000608_170 Hb_003976_020--Hb_000608_170 Hb_185447_010 Hb_185447_010 Hb_003976_020--Hb_185447_010 Hb_001584_200 Hb_001584_200 Hb_003976_020--Hb_001584_200 Hb_000337_050 Hb_000337_050 Hb_018133_090--Hb_000337_050 Hb_001049_110 Hb_001049_110 Hb_018133_090--Hb_001049_110 Hb_011716_130 Hb_011716_130 Hb_018133_090--Hb_011716_130 Hb_015941_020 Hb_015941_020 Hb_018133_090--Hb_015941_020 Hb_002811_130 Hb_002811_130 Hb_018133_090--Hb_002811_130 Hb_103118_010 Hb_103118_010 Hb_018133_090--Hb_103118_010 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230 Hb_003994_110 Hb_003994_110 Hb_001824_090--Hb_003994_110 Hb_000613_110 Hb_000613_110 Hb_001824_090--Hb_000613_110 Hb_007101_080 Hb_007101_080 Hb_001824_090--Hb_007101_080 Hb_002078_340 Hb_002078_340 Hb_001824_090--Hb_002078_340 Hb_001824_090--Hb_003376_230 Hb_000077_150 Hb_000077_150 Hb_001824_090--Hb_000077_150 Hb_000928_010 Hb_000928_010 Hb_000608_170--Hb_000928_010 Hb_000608_170--Hb_000462_090 Hb_005282_020 Hb_005282_020 Hb_000608_170--Hb_005282_020 Hb_002685_060 Hb_002685_060 Hb_000608_170--Hb_002685_060 Hb_114310_110 Hb_114310_110 Hb_000608_170--Hb_114310_110 Hb_000608_170--Hb_000340_150 Hb_000208_120 Hb_000208_120 Hb_185447_010--Hb_000208_120 Hb_185447_010--Hb_114310_110 Hb_185447_010--Hb_018133_090 Hb_001439_060 Hb_001439_060 Hb_185447_010--Hb_001439_060 Hb_185447_010--Hb_000608_170 Hb_000224_160 Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_001584_200--Hb_003376_230 Hb_012022_150 Hb_012022_150 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_001584_200--Hb_000172_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.858 2.78176 25.3584 25.4113 27.3841 28.5673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6779 42.5633 53.2563 21.7096 85.1097

CAGE analysis