Hb_007101_080

Information

Type transcription factor
Description TF Family: GNAT
Location Contig7101: 38367-43957
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14530g
description POPTRDRAFT_564771; GCN5-related N-acetyltransferase family protein
nr
ID XP_002312509.1
description GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HJR4
description GCN5-related N-acetyltransferase family protein OS=Populus trichocarpa GN=POPTR_0008s14530g PE=4 SV=1
Gene Ontology
ID GO:0009507
description acyl- n-acyltransferases-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55238: 38374-43745
cDNA
(Sanger)
(ID:Location)		 032_J14.ab1: 42244-43745

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_080 0.0 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
2 Hb_000025_270 0.0824247176 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
3 Hb_032920_050 0.08394081 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
4 Hb_000613_110 0.0846860509 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
5 Hb_004218_190 0.0890836391 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
6 Hb_001824_090 0.0968280548 - - -
7 Hb_003994_110 0.096835074 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
8 Hb_036790_080 0.0969115269 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
9 Hb_000033_110 0.1003731935 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
10 Hb_003376_230 0.1006421616 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
11 Hb_003020_030 0.1024968638 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
12 Hb_000359_210 0.104008853 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000300_470 0.1044664206 - - PREDICTED: nucleolin-like [Jatropha curcas]
14 Hb_003475_020 0.1065594853 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
15 Hb_000212_440 0.1067453168 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_011228_010 0.1084178942 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_002078_340 0.1106865576 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
18 Hb_002897_090 0.1131097902 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000062_510 0.1139632241 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
20 Hb_000046_540 0.113966392 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]

Gene co-expression network

sample Hb_007101_080 Hb_007101_080 Hb_000025_270 Hb_000025_270 Hb_007101_080--Hb_000025_270 Hb_032920_050 Hb_032920_050 Hb_007101_080--Hb_032920_050 Hb_000613_110 Hb_000613_110 Hb_007101_080--Hb_000613_110 Hb_004218_190 Hb_004218_190 Hb_007101_080--Hb_004218_190 Hb_001824_090 Hb_001824_090 Hb_007101_080--Hb_001824_090 Hb_003994_110 Hb_003994_110 Hb_007101_080--Hb_003994_110 Hb_003020_030 Hb_003020_030 Hb_000025_270--Hb_003020_030 Hb_004724_410 Hb_004724_410 Hb_000025_270--Hb_004724_410 Hb_001623_280 Hb_001623_280 Hb_000025_270--Hb_001623_280 Hb_001936_090 Hb_001936_090 Hb_000025_270--Hb_001936_090 Hb_000025_270--Hb_004218_190 Hb_036790_080 Hb_036790_080 Hb_032920_050--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_032920_050--Hb_000130_320 Hb_032920_050--Hb_000613_110 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_032920_050--Hb_003994_110 Hb_005731_160 Hb_005731_160 Hb_000613_110--Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_000613_110--Hb_002811_010 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_003106_190 Hb_003106_190 Hb_000613_110--Hb_003106_190 Hb_000613_110--Hb_003994_110 Hb_000300_470 Hb_000300_470 Hb_004218_190--Hb_000300_470 Hb_000365_240 Hb_000365_240 Hb_004218_190--Hb_000365_240 Hb_005250_010 Hb_005250_010 Hb_004218_190--Hb_005250_010 Hb_000046_540 Hb_000046_540 Hb_004218_190--Hb_000046_540 Hb_011377_040 Hb_011377_040 Hb_004218_190--Hb_011377_040 Hb_001824_090--Hb_003994_110 Hb_001824_090--Hb_000613_110 Hb_002078_340 Hb_002078_340 Hb_001824_090--Hb_002078_340 Hb_003376_230 Hb_003376_230 Hb_001824_090--Hb_003376_230 Hb_000077_150 Hb_000077_150 Hb_001824_090--Hb_000077_150 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_003994_110--Hb_003106_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16813 1.1389 3.44388 3.05383 2.79792 3.76376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83609 2.27311 2.88677 3.66583 8.03944

CAGE analysis