Hb_000984_270

Information

Type -
Description -
Location Contig984: 283442-284767
Sequence    

Annotation

kegg
ID rcu:RCOM_1584930
description hypothetical protein
nr
ID XP_002510021.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R6S8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1584930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64585: 284083-285816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001604_120 0.1001822018 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
3 Hb_006846_070 0.1034151801 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
4 Hb_000613_010 0.106268066 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
5 Hb_000108_050 0.1143845584 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
6 Hb_005672_020 0.117975018 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
7 Hb_000135_030 0.1207912238 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
8 Hb_000136_140 0.1293671667 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
9 Hb_000200_030 0.1297545938 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
10 Hb_000365_100 0.130916427 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
11 Hb_002053_110 0.1316122465 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_012305_100 0.1325066452 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
13 Hb_001981_040 0.1326424088 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
14 Hb_002498_140 0.1330672431 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
15 Hb_001584_200 0.1357067122 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
16 Hb_007101_080 0.1365462487 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
17 Hb_004398_030 0.1372014405 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
18 Hb_001205_300 0.1384370716 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
19 Hb_000920_030 0.1395299299 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_005271_110 0.1397647725 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_270 Hb_000984_270 Hb_001604_120 Hb_001604_120 Hb_000984_270--Hb_001604_120 Hb_006846_070 Hb_006846_070 Hb_000984_270--Hb_006846_070 Hb_000613_010 Hb_000613_010 Hb_000984_270--Hb_000613_010 Hb_000108_050 Hb_000108_050 Hb_000984_270--Hb_000108_050 Hb_005672_020 Hb_005672_020 Hb_000984_270--Hb_005672_020 Hb_000135_030 Hb_000135_030 Hb_000984_270--Hb_000135_030 Hb_000181_240 Hb_000181_240 Hb_001604_120--Hb_000181_240 Hb_002498_140 Hb_002498_140 Hb_001604_120--Hb_002498_140 Hb_000015_100 Hb_000015_100 Hb_001604_120--Hb_000015_100 Hb_000445_140 Hb_000445_140 Hb_001604_120--Hb_000445_140 Hb_000416_200 Hb_000416_200 Hb_001604_120--Hb_000416_200 Hb_000365_100 Hb_000365_100 Hb_001604_120--Hb_000365_100 Hb_006846_070--Hb_000416_200 Hb_004109_260 Hb_004109_260 Hb_006846_070--Hb_004109_260 Hb_000061_150 Hb_000061_150 Hb_006846_070--Hb_000061_150 Hb_000480_040 Hb_000480_040 Hb_006846_070--Hb_000480_040 Hb_006846_070--Hb_001604_120 Hb_000172_350 Hb_000172_350 Hb_000613_010--Hb_000172_350 Hb_000136_140 Hb_000136_140 Hb_000613_010--Hb_000136_140 Hb_011486_040 Hb_011486_040 Hb_000613_010--Hb_011486_040 Hb_001981_040 Hb_001981_040 Hb_000613_010--Hb_001981_040 Hb_009020_040 Hb_009020_040 Hb_000613_010--Hb_009020_040 Hb_000108_050--Hb_000445_140 Hb_002150_140 Hb_002150_140 Hb_000108_050--Hb_002150_140 Hb_156850_100 Hb_156850_100 Hb_000108_050--Hb_156850_100 Hb_001828_040 Hb_001828_040 Hb_000108_050--Hb_001828_040 Hb_001014_100 Hb_001014_100 Hb_000108_050--Hb_001014_100 Hb_000244_180 Hb_000244_180 Hb_000108_050--Hb_000244_180 Hb_002304_080 Hb_002304_080 Hb_005672_020--Hb_002304_080 Hb_000371_100 Hb_000371_100 Hb_005672_020--Hb_000371_100 Hb_005672_020--Hb_001828_040 Hb_001584_200 Hb_001584_200 Hb_005672_020--Hb_001584_200 Hb_021346_030 Hb_021346_030 Hb_005672_020--Hb_021346_030 Hb_002496_020 Hb_002496_020 Hb_005672_020--Hb_002496_020 Hb_114310_110 Hb_114310_110 Hb_000135_030--Hb_114310_110 Hb_004398_030 Hb_004398_030 Hb_000135_030--Hb_004398_030 Hb_000135_030--Hb_011486_040 Hb_007811_030 Hb_007811_030 Hb_000135_030--Hb_007811_030 Hb_000135_030--Hb_002496_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.34833 0.556051 6.09134 3.76583 3.80765 3.76312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40123 1.92251 3.81806 2.31246 8.56294

CAGE analysis