Hb_000172_350

Information

Type -
Description -
Location Contig172: 398611-416929
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06010g
description POPTRDRAFT_562644; C2 domain-containing family protein
nr
ID XP_012093325.1
description PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
swissprot
ID Q9SNC6
description U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
trembl
ID A0A067LES6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24101 PE=4 SV=1
Gene Ontology
ID GO:0005737
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16149: 397898-398720 , PASA_asmbl_16150: 398732-404187 , PASA_asmbl_16152: 407623-416914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_350 0.0 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
2 Hb_005250_010 0.0954384283 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
3 Hb_000934_110 0.0997262112 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
4 Hb_022250_010 0.1023568897 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
5 Hb_001801_020 0.1027482301 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
6 Hb_000562_050 0.1044270421 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
7 Hb_006355_020 0.1109403642 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
8 Hb_004735_020 0.1121150827 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
9 Hb_001157_230 0.1131624632 - - Protein AFR, putative [Ricinus communis]
10 Hb_022250_100 0.1133062122 - - calnexin, putative [Ricinus communis]
11 Hb_000200_350 0.1140676128 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
12 Hb_001876_040 0.1151667018 - - PREDICTED: mucin-5B [Jatropha curcas]
13 Hb_003632_030 0.117934754 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
14 Hb_000579_240 0.1184504985 - - phosphatidylinositol transporter, putative [Ricinus communis]
15 Hb_000613_010 0.1191977306 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
16 Hb_009020_040 0.1199857448 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
17 Hb_003682_070 0.1200379839 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
18 Hb_000479_170 0.120074487 - - chaperone clpb, putative [Ricinus communis]
19 Hb_001882_020 0.1220342055 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
20 Hb_005914_040 0.1251906751 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_350 Hb_000172_350 Hb_005250_010 Hb_005250_010 Hb_000172_350--Hb_005250_010 Hb_000934_110 Hb_000934_110 Hb_000172_350--Hb_000934_110 Hb_022250_010 Hb_022250_010 Hb_000172_350--Hb_022250_010 Hb_001801_020 Hb_001801_020 Hb_000172_350--Hb_001801_020 Hb_000562_050 Hb_000562_050 Hb_000172_350--Hb_000562_050 Hb_006355_020 Hb_006355_020 Hb_000172_350--Hb_006355_020 Hb_013405_080 Hb_013405_080 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110 Hb_000200_350 Hb_000200_350 Hb_000934_110--Hb_000200_350 Hb_000589_110 Hb_000589_110 Hb_000934_110--Hb_000589_110 Hb_000934_110--Hb_005250_010 Hb_007769_040 Hb_007769_040 Hb_000934_110--Hb_007769_040 Hb_003462_060 Hb_003462_060 Hb_000934_110--Hb_003462_060 Hb_001876_040 Hb_001876_040 Hb_022250_010--Hb_001876_040 Hb_183086_030 Hb_183086_030 Hb_022250_010--Hb_183086_030 Hb_001157_230 Hb_001157_230 Hb_022250_010--Hb_001157_230 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_001029_040 Hb_001029_040 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_033642_060 Hb_033642_060 Hb_001801_020--Hb_033642_060 Hb_002400_060 Hb_002400_060 Hb_001801_020--Hb_002400_060 Hb_001801_020--Hb_183086_030 Hb_001801_020--Hb_022250_010 Hb_126976_010 Hb_126976_010 Hb_001801_020--Hb_126976_010 Hb_002817_060 Hb_002817_060 Hb_001801_020--Hb_002817_060 Hb_156850_090 Hb_156850_090 Hb_000562_050--Hb_156850_090 Hb_000562_050--Hb_022250_010 Hb_001789_020 Hb_001789_020 Hb_000562_050--Hb_001789_020 Hb_001059_130 Hb_001059_130 Hb_000562_050--Hb_001059_130 Hb_000562_050--Hb_033642_060 Hb_000562_050--Hb_006355_020 Hb_000284_230 Hb_000284_230 Hb_006355_020--Hb_000284_230 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_001194_020 Hb_001194_020 Hb_006355_020--Hb_001194_020 Hb_006355_020--Hb_001059_130 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4476 8.80184 11.4218 24.69 13.0285 12.5129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13591 3.78115 8.57954 10.0524 35.3131

CAGE analysis